Prochlorococcus marinus str. MIT 9312

Gram-negativeCocciNon-motile

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Prochlorococcaceae

Genus

Prochlorococcus

Description

Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilyProchlorococcaceae
GenusProchlorococcus
SpeciesProchlorococcus marinus
StrainMIT 9312

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Prochlorococcus marinus str. MIT 9312
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhotosynthetic
PathogenicityNo

Genome Summary

Prochlorococcus marinus str. MIT 9312

Accession NumberNC_007577.1

Gene Summary

Adenine Count

586668 bp

Thymine Count

589085 bp

Guanine Count

266624 bp

Cytosine Count

266827 bp

Genome Length

1709204 bp

Protein-coding Genes

1877 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
udp-n-acetylmuramate dehydrogenasePMT9312_RS00105Not Available-21682 - 2257532724.7
udp-n-acetylmuramate--l-alanine ligasePMT9312_RS00110Not Available-22584 - 2399352734.8
type i glyceraldehyde-3-phosphate dehydrogenasePMT9312_RS00115Not Available+24187 - 2520937075.0
thiamine-phosphate kinasePMT9312_RS00120Not Available-25210 - 2619637102.1
peptidylprolyl isomerasePMT9312_RS00125Not Available-26189 - 2728041125.1
elongation factor pPMT9312_RS00130Not Available+27324 - 2788420432.4
acetyl-coa carboxylase biotin carboxyl carrier proteinPMT9312_RS00135Not Available+27884 - 2838718544.0
4-hydroxythreonine-4-phosphate dehydrogenase pdxaPMT9312_RS00140Not Available-28364 - 2939537760.2
oxidoreductasePMT9312_RS00145Not Available-29419 - 3029733122.9
hnh endonucleasePMT9312_RS00155Not Available-30561 - 3096215568.6

Displaying genes 21 – 30 of 1923 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

57 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 57 metabolites