Kocuria palustris str. CD07_3

Gram-positiveAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria palustris str. CD07_3 is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. As a member of the genus Kocuria, this strain exhibits the typical morphological and physiological traits associated with Gram-positive bacteria, including a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. The aerobic nature of K. palustris str. CD07_3 indicates its reliance on oxygen for metabolism, which may suggest a role in biogeochemical cycles where oxygen is present. This metabolic requirement could enable the strain to participate in the degradation of organic materials in oxygenated environments, potentially influencing nutrient cycling and microbial community dynamics in its habitat. Furthermore, the presence of Kocuria species in various environments, including soil and water, points to their adaptability and ecological significance. While specific ecological interactions and the broader impact of K. palustris str. CD07_3 on its environment remain to be explored, its aerobic metabolism suggests it may play a role in maintaining the balance of microbial communities in habitats where oxygen levels fluctuate, thus contributing to ecosystem resilience.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria palustris
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria palustris str. CD07_3

Accession NumberLQBJ00000000.1

Gene Summary

Adenine Count

417034 bp

Thymine Count

421300 bp

Guanine Count

998127 bp

Cytosine Count

996945 bp

Genome Length

2833425 bp

Protein-coding Genes

2365 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycogen branching proteinAVL60_11760Q47SE7-462 - 4385142685.0
trehalose synthaseAVL60_11765A0R6E0-4433 - 619967183.7
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferaseAVL60_11770Q9L1K2-6305 - 832375712.6
glycogen phosphorylaseAVL60_11775P9WMW0+8593 - 1117895185.7
glycogen debranching enzymeAVL60_11780Not Available-11231 - 1345381005.0
rna methyltransferaseAVL60_11785Q1B2P4-13446 - 1444435744.6
cysteine--trna ligaseAVL60_11790B2GFS8-14553 - 1599552768.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseAVL60_11795B8HCR6-16006 - 1651817397.4
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseAVL60_11800B2HJ23-16521 - 1732428519.1
card family transcriptional regulatorAVL60_11805P9WJG2-17336 - 1781817984.6

Displaying genes 1 – 10 of 2416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

489 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001788tartrateC4H4O6Chemical structure of tartrateNot available
Average148.071Da
Monoisotopic148.001885Da
BASm0001795pentanoateC5H9O2Chemical structure of pentanoateNot available
Average101.126Da
Monoisotopic101.0608031Da
BASm0001797tetracosanoateC24H47O2Chemical structure of tetracosanoateNot available
Average367.6288Da
Monoisotopic367.357605748Da
BASm0001827nonanoateC9H17O2Chemical structure of nonanoateNot available
Average157.234Da
Monoisotopic157.123403367Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm00019783-(4-hydroxyphenyl)pyruvateC9H7O4Chemical structure of 3-(4-hydroxyphenyl)pyruvateNot available
Average179.1495Da
Monoisotopic179.034433712Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da

Displaying 41–50 of 489 metabolites