Kocuria palustris str. CD07_3

Gram-positiveAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria palustris str. CD07_3 is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. As a member of the genus Kocuria, this strain exhibits the typical morphological and physiological traits associated with Gram-positive bacteria, including a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. The aerobic nature of K. palustris str. CD07_3 indicates its reliance on oxygen for metabolism, which may suggest a role in biogeochemical cycles where oxygen is present. This metabolic requirement could enable the strain to participate in the degradation of organic materials in oxygenated environments, potentially influencing nutrient cycling and microbial community dynamics in its habitat. Furthermore, the presence of Kocuria species in various environments, including soil and water, points to their adaptability and ecological significance. While specific ecological interactions and the broader impact of K. palustris str. CD07_3 on its environment remain to be explored, its aerobic metabolism suggests it may play a role in maintaining the balance of microbial communities in habitats where oxygen levels fluctuate, thus contributing to ecosystem resilience.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria palustris
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria palustris str. CD07_3

Accession NumberLQBJ00000000.1

Gene Summary

Adenine Count

417034 bp

Thymine Count

421300 bp

Guanine Count

998127 bp

Cytosine Count

996945 bp

Genome Length

2833425 bp

Protein-coding Genes

2365 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycogen branching proteinAVL60_11760Q47SE7-462 - 4385142685.0
trehalose synthaseAVL60_11765A0R6E0-4433 - 619967183.7
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferaseAVL60_11770Q9L1K2-6305 - 832375712.6
glycogen phosphorylaseAVL60_11775P9WMW0+8593 - 1117895185.7
glycogen debranching enzymeAVL60_11780Not Available-11231 - 1345381005.0
rna methyltransferaseAVL60_11785Q1B2P4-13446 - 1444435744.6
cysteine--trna ligaseAVL60_11790B2GFS8-14553 - 1599552768.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseAVL60_11795B8HCR6-16006 - 1651817397.4
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseAVL60_11800B2HJ23-16521 - 1732428519.1
card family transcriptional regulatorAVL60_11805P9WJG2-17336 - 1781817984.6

Displaying genes 1 – 10 of 2416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

489 records
Metabolite IDMetabolite nameStructureCAS number
BASm0034640Pentaglutamyl Folate (Thf)C39H45N11O18Chemical structure of Pentaglutamyl Folate (Thf)NULL
Average955.851Da
Monoisotopic955.297695132Da
BASm0034649Propinol adenylateC13H18N5O8PChemical structure of Propinol adenylateNULL
Average403.2845Da
Monoisotopic403.089299089Da
BASm003465710-Formyltetrahydrofolate-[Glu](5)C40H45N11O19Not availableNULL
Average983.861Da
Monoisotopic983.292609752Da
BASm0034668N6-Acetyl-LL-2,6-diaminoheptanedioateC9H14N2O5Chemical structure of N6-Acetyl-LL-2,6-diaminoheptanedioateNULL
Average230.221Da
Monoisotopic230.091368719Da
BASm0034669PhytoeneC40H64Chemical structure of PhytoeneNULL
Average544.9362Da
Monoisotopic544.500802048Da
BASm0034676Reduced FMNC17H23N4O9PChemical structure of Reduced FMNNULL
Average458.3597Da
Monoisotopic458.120264866Da
BASm0034680Glycyl-L-tyrosineC11H14N2O4Chemical structure of Glycyl-L-tyrosineNULL
Average238.243Da
Monoisotopic238.095356939Da
BASm0034685MucolactoneC6H6O4Chemical structure of MucolactoneNULL
Average142.11Da
Monoisotopic142.026608673Da
BASm00346882-deoxy-5-keto-D-gluconic acidC6H10O6Chemical structure of 2-deoxy-5-keto-D-gluconic acidNULL
Average178.14Da
Monoisotopic178.047738042Da

Displaying 481–489 of 489 metabolites