Kocuria palustris str. CD07_3

Gram-positiveAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria palustris str. CD07_3 is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. As a member of the genus Kocuria, this strain exhibits the typical morphological and physiological traits associated with Gram-positive bacteria, including a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. The aerobic nature of K. palustris str. CD07_3 indicates its reliance on oxygen for metabolism, which may suggest a role in biogeochemical cycles where oxygen is present. This metabolic requirement could enable the strain to participate in the degradation of organic materials in oxygenated environments, potentially influencing nutrient cycling and microbial community dynamics in its habitat. Furthermore, the presence of Kocuria species in various environments, including soil and water, points to their adaptability and ecological significance. While specific ecological interactions and the broader impact of K. palustris str. CD07_3 on its environment remain to be explored, its aerobic metabolism suggests it may play a role in maintaining the balance of microbial communities in habitats where oxygen levels fluctuate, thus contributing to ecosystem resilience.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria palustris
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria palustris str. CD07_3

Accession NumberLQBJ00000000.1

Gene Summary

Adenine Count

417034 bp

Thymine Count

421300 bp

Guanine Count

998127 bp

Cytosine Count

996945 bp

Genome Length

2833425 bp

Protein-coding Genes

2365 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycogen branching proteinAVL60_11760Q47SE7-462 - 4385142685.0
trehalose synthaseAVL60_11765A0R6E0-4433 - 619967183.7
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferaseAVL60_11770Q9L1K2-6305 - 832375712.6
glycogen phosphorylaseAVL60_11775P9WMW0+8593 - 1117895185.7
glycogen debranching enzymeAVL60_11780Not Available-11231 - 1345381005.0
rna methyltransferaseAVL60_11785Q1B2P4-13446 - 1444435744.6
cysteine--trna ligaseAVL60_11790B2GFS8-14553 - 1599552768.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseAVL60_11795B8HCR6-16006 - 1651817397.4
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseAVL60_11800B2HJ23-16521 - 1732428519.1
card family transcriptional regulatorAVL60_11805P9WJG2-17336 - 1781817984.6

Displaying genes 1 – 10 of 2416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

489 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001369peroxynitriteNO3Chemical structure of peroxynitrite19059-14-4
Average62.0049Da
Monoisotopic61.987817871Da

Displaying 21–30 of 489 metabolites