Thermococcus kodakarensis KOD1

Gram-negativeCocciMotileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus kodakaraensis strain KOD1. This organism was originally identified as Pyrococcus sp. strain KOD1. It was isolated from a solfatara on Kodakara Island, Japan. A gene disruption system has been developed for this organism. A thermostabile DNA polymerase is commercially available that was originally isolated from this organism and research is continuing to develop commercial applications for other heat-stable enzymes from this organism (NCBI BioProject: bp_list[1])

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus kodakarensis
StrainKOD1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thermococcus kodakarensis KOD1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature85
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Thermococcus kodakarensis KOD1

Accession NumberNC_006624

Gene Summary

Adenine Count

503440 bp

Thymine Count

499248 bp

Guanine Count

542161 bp

Cytosine Count

543888 bp

Genome Length

2088737 bp

Protein-coding Genes

1838089 genes

Non-Coding Genes

250648 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dna polymeraseTK_RS00010Not Available+1 - 5016193416.0
m48 family metallopeptidaseTK_RS00015Not Available+5086 - 573325256.8
nfed family proteinTK_RS00020Not Available+5730 - 611913833.6
hypothetical proteinTK_RS00025Not Available-6079 - 652816564.8
coa-binding proteinTK_RS00030Not Available+6586 - 701416674.2
pin domain-containing proteinTK_RS00035Not Available-7152 - 742710538.8
hypothetical proteinTK_RS00040Not Available-7399 - 76148020.75
trm11 family sam-dependent methyltransferaseTK_RS00045Not Available-7655 - 875542742.0
tetratricopeptide repeat proteinTK_RS00050Not Available+8843 - 1009345951.2
hypothetical proteinTK_RS00055Not Available+10095 - 1037910832.2

Displaying genes 1 – 10 of 2357 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

102 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002906all-trans-octaprenyl diphosphateC40H65O7P2Chemical structure of all-trans-octaprenyl diphosphateNot available
Average719.8874Da
Monoisotopic719.4205525Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm0003070D-methionineC5H11NO2SChemical structure of D-methionine348-67-4
Average149.211Da
Monoisotopic149.0510493Da
BASm0003107S-inosyl-L-homocysteineC14H19N5O6SChemical structure of S-inosyl-L-homocysteineNot available
Average385.396Da
Monoisotopic385.1056041Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003314(2R)-2,3-bisphosphoglycerateC3H3O10P2Chemical structure of (2R)-2,3-bisphosphoglycerateNot available
Average260.997Da
Monoisotopic260.922888192Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da

Displaying 31–40 of 102 metabolites