Thermococcus kodakarensis KOD1

Gram-negativeCocciMotileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus kodakaraensis strain KOD1. This organism was originally identified as Pyrococcus sp. strain KOD1. It was isolated from a solfatara on Kodakara Island, Japan. A gene disruption system has been developed for this organism. A thermostabile DNA polymerase is commercially available that was originally isolated from this organism and research is continuing to develop commercial applications for other heat-stable enzymes from this organism (NCBI BioProject: bp_list[1])

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus kodakarensis
StrainKOD1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thermococcus kodakarensis KOD1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature85
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Thermococcus kodakarensis KOD1

Accession NumberNC_006624

Gene Summary

Adenine Count

503440 bp

Thymine Count

499248 bp

Guanine Count

542161 bp

Cytosine Count

543888 bp

Genome Length

2088737 bp

Protein-coding Genes

1838089 genes

Non-Coding Genes

250648 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dna polymeraseTK_RS00010Not Available+1 - 5016193416.0
m48 family metallopeptidaseTK_RS00015Not Available+5086 - 573325256.8
nfed family proteinTK_RS00020Not Available+5730 - 611913833.6
hypothetical proteinTK_RS00025Not Available-6079 - 652816564.8
coa-binding proteinTK_RS00030Not Available+6586 - 701416674.2
pin domain-containing proteinTK_RS00035Not Available-7152 - 742710538.8
hypothetical proteinTK_RS00040Not Available-7399 - 76148020.75
trm11 family sam-dependent methyltransferaseTK_RS00045Not Available-7655 - 875542742.0
tetratricopeptide repeat proteinTK_RS00050Not Available+8843 - 1009345951.2
hypothetical proteinTK_RS00055Not Available+10095 - 1037910832.2

Displaying genes 1 – 10 of 2357 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

102 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001988(R)-mevalonateC6H11O4Chemical structure of (R)-mevalonateNot available
Average147.1491Da
Monoisotopic147.0657338Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002375dihydromethanophenazineC37H52N2OChemical structure of dihydromethanophenazineNot available
Average540.836Da
Monoisotopic540.4079643Da
BASm0002546(indol-3-yl)acetyl-CoAC31H39N8O17P3SChemical structure of (indol-3-yl)acetyl-CoANot available
Average920.68Da
Monoisotopic920.1388683Da
BASm0002665prostaglandin F2alphaC20H33O5Chemical structure of prostaglandin F2alpha0551-11-1
Average353.48Da
Monoisotopic353.2333477Da
BASm0002666prostaglandin H2C20H31O5Chemical structure of prostaglandin H242935-17-1
Average351.464Da
Monoisotopic351.2176977Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da

Displaying 21–30 of 102 metabolites