Thermococcus kodakarensis KOD1

Gram-negativeCocciMotileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus kodakaraensis strain KOD1. This organism was originally identified as Pyrococcus sp. strain KOD1. It was isolated from a solfatara on Kodakara Island, Japan. A gene disruption system has been developed for this organism. A thermostabile DNA polymerase is commercially available that was originally isolated from this organism and research is continuing to develop commercial applications for other heat-stable enzymes from this organism (NCBI BioProject: bp_list[1])

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus kodakarensis
StrainKOD1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thermococcus kodakarensis KOD1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature85
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Thermococcus kodakarensis KOD1

Accession NumberNC_006624

Gene Summary

Adenine Count

503440 bp

Thymine Count

499248 bp

Guanine Count

542161 bp

Cytosine Count

543888 bp

Genome Length

2088737 bp

Protein-coding Genes

1838089 genes

Non-Coding Genes

250648 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypc/hybg/hupf family hydrogenase formation chaperoneTK_RS10035Not Available-1802727 - 18029548255.15
molybdenum cofactor guanylyltransferase mobaTK_RS10040Not Available+1803039 - 180364422867.5
hypothetical proteinTK_RS10045Not Available-1803681 - 18038998135.9
hydrogenase 3 maturation endopeptidase hyciTK_RS10050Not Available-1803935 - 180441117039.8
putative toxin-antitoxin system toxin component, pin familyTK_RS10055Not Available-1804415 - 180493319647.8
hypothetical proteinTK_RS10060Not Available-1804885 - 180521712732.3
mrp/nbp35 family atp-binding proteinTK_RS10065Not Available-1805275 - 180602127587.7
hydrogenase nickel incorporation protein hypaTK_RS10070Not Available-1806018 - 180643715689.8
cation diffusion facilitator family transporterTK_RS10075Not Available+1806549 - 180744833462.9
nifb/nifx family molybdenum-iron cluster-binding proteinTK_RS12250Not Available+1807441 - 18076116291.6

Displaying genes 2041 – 2050 of 2357 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

102 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 102 metabolites