Holdemania filiformis

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemania

Description

Holdemania filiformis is a Gram-positive, filamentous microbe that thrives in mesophilic environments, namely temperatures between 25-40°C. This microbe is a chemoheterotroph, meaning it utilizes organic compounds as its energy source, producing ATP through anaerobic fermentation. Specifically, H. filiformis utilizes cellulose and other plant polymers as its primary source of energy. As a filamentous microbe, H. filiformis exhibits a unique morphology, comprising long, branching cells that range from 1-10 μm in diameter. This peculiar shape allows the microbe to colonize diverse environments, including soil, sediment, and even the human gut. H. filiformis is an obligate anaerobe, meaning it requires a lack of oxygen to survive and reproduce. In fact, the microbe is capable of reducing nitrate to nitrite, a process that is typically associated with anaerobic conditions. This unique adaptation allows H. filiformis to thrive in environments where oxygen levels are limited, such as in the gastrointestinal tract or in sedimentary layers. Interestingly, H. filiformis has been found to inhabit a wide range of body sites across various species, including the human gut, where it plays a role in degrading complex carbohydrates and producing short-chain fatty acids. The microbe's ability to thrive in diverse environments and its unique metabolic properties make it a fascinating subject for further study. Despite being a relatively newly discovered microbe, H. filiformis has already demonstrated potential applications in biotechnology, including the breakdown of cellulose and the production of biofuels. Further research on this microbe could unlock new insights into its role in ecosystems and potential uses in biotechnology and medicine.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemania
SpeciesHoldemania filiformis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemania filiformis

Accession NumberQRUP00000000.1

Gene Summary

Adenine Count

941653 bp

Thymine Count

928231 bp

Guanine Count

950075 bp

Cytosine Count

924535 bp

Genome Length

3744856 bp

Protein-coding Genes

3349 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
d-alanyl-d-alanine carboxypeptidaseDWY25_00145Not Available-29912 - 3091937669.3
s-adenosylmethionine-dependent methyltransferaseDWY25_00150Not Available-31169 - 3164518362.7
merr family transcriptional regulatorDWY25_00155Not Available-31727 - 3255130975.3
duf5131 family proteinDWY25_00160Not Available-32555 - 3348435406.2
mate family efflux transporterDWY25_00165Not Available-33913 - 3524448445.0
aconitate hydrataseDWY25_00170Not Available-35407 - 3732968849.4
citrate synthaseDWY25_00175Not Available+37468 - 3881150183.8
sulfite exporter taue/safe family proteinDWY25_00180Not Available+38941 - 3971426997.3
tetr/acrr family transcriptional regulatorDWY25_00185Not Available+39911 - 4047421169.5
Ncrna_class:srp_rnaNot AvailableNot Available+40330 - 40427Not Available

Displaying genes 171 – 180 of 3482 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites