Syntrophus aciditrophicus SB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophia

Order

Syntrophales

Family

Syntrophaceae

Genus

Syntrophus

Description

The syntrophic benzoate degrader Syntrophus aciditrophicus (strain SB) is a new, strictly anaerobic, Gram-negative, nonmotile, non-sporeforming, rod-shaped bacterium that degrades benzoate and certain fatty acids (saturated and unsaturated) to acetate, carbon dioxide, hydrogen, and possibly formate in syntrophic association, or not, with hydrogen/formate-using methanogen microorganisms or a sulfate reducer. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophia
OrderSyntrophales
FamilySyntrophaceae
GenusSyntrophus
SpeciesSyntrophus aciditrophicus
StrainSB

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Syntrophus aciditrophicus SB
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophus aciditrophicus SB

Accession NumberNC_007759.1

Gene Summary

Adenine Count

772747 bp

Thymine Count

770484 bp

Guanine Count

823297 bp

Cytosine Count

812772 bp

Genome Length

3179300 bp

Protein-coding Genes

2866 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
formate dehydrogenase accessory protein fdheSYN_RS15475Not Available+2742255 - 274308532135.0
endonuclease iii domain-containing proteinSYN_RS12875Not Available+2743110 - 274373023287.2
dna polymerase/3'-5' exonuclease polxSYN_RS12880Not Available-2743872 - 274561464630.3
type i restriction-modification system subunit m n-terminal domain-containing proteinSYN_RS12885Not Available+2745839 - 274658927831.5
preprotein translocase subunit secgSYN_RS12890Not Available+2746623 - 274701512805.6
Trna-leuNot AvailableNot Available+2747175 - 2747261Not Available
crispr-associated endonuclease cas2SYN_RS12900Not Available-2753165 - 275345511180.5
type i-c crispr-associated endonuclease cas1cSYN_RS12905Not Available-2753501 - 275453239066.6
crispr-associated protein cas4SYN_RS12910Not Available-2754529 - 275516124137.3
type i-c crispr-associated protein cas7/csd2SYN_RS12915Not Available-2755237 - 275611231927.7

Displaying genes 2561 – 2570 of 2955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

52 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 1–10 of 52 metabolites