Syntrophus aciditrophicus SB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophia

Order

Syntrophales

Family

Syntrophaceae

Genus

Syntrophus

Description

The syntrophic benzoate degrader Syntrophus aciditrophicus (strain SB) is a new, strictly anaerobic, Gram-negative, nonmotile, non-sporeforming, rod-shaped bacterium that degrades benzoate and certain fatty acids (saturated and unsaturated) to acetate, carbon dioxide, hydrogen, and possibly formate in syntrophic association, or not, with hydrogen/formate-using methanogen microorganisms or a sulfate reducer. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Thermodesulfobacteriota
Class	Syntrophia
Order	Syntrophales
Family	Syntrophaceae
Genus	Syntrophus
Species	Syntrophus aciditrophicus
Strain	SB

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	35
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Syntrophus aciditrophicus SB

Accession NumberNC_007759.1

Gene Summary

Adenine Count

772747 bp

Thymine Count

770484 bp

Guanine Count

823297 bp

Cytosine Count

812772 bp

Genome Length

3179300 bp

Protein-coding Genes

2866 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
trna adenosine(34) deaminase tada	SYN_RS00370	Not Available	+	78720 - 79283	20567.5
Trna-ser	Not Available	Not Available	+	79290 - 79383	Not Available
Trna-ser	Not Available	Not Available	+	79590 - 79683	Not Available
Ncrna_class:srp_rna	Not Available	Not Available	+	79764 - 79862	Not Available
dna polymerase iii subunit gamma/tau	SYN_RS00385	Not Available	+	80085 - 81851	65662.8
ybab/ebfc family nucleoid-associated protein	SYN_RS00390	Not Available	+	81936 - 82250	11203.8
recombination mediator recr	SYN_RS00395	Not Available	+	82268 - 82879	22285.1
fumarate hydratase	SYN_RS00400	Not Available	+	82905 - 83759	30635.2
fe-s-containing hydro-lyase	SYN_RS00405	Not Available	+	83759 - 84319	20019.5
2-oxoacid:acceptor oxidoreductase family protein	SYN_RS00410	Not Available	+	84555 - 85100	20031.6

Displaying genes 121 – 130 of 2955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0001717	fumarateC4H2O4		Not available	Average114.0563Da Monoisotopic113.9953086Da
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0001921	(S)-3-methyl-2-oxopentanoateC6H9O3		`1460-34-0`	Average129.1339Da Monoisotopic129.0551692Da
BASm0002157	7-cyano-7-deazaguanineC7H5N5O		Not available	Average175.1475Da Monoisotopic175.0494098Da
BASm0002243	S-methyl-5'-thioinosineC11H14N4O4S		Not available	Average298.32Da Monoisotopic298.0735761Da
BASm0002307	(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4		Not available	Average147.1491Da Monoisotopic147.06573384Da
BASm0002751	(S)-4-amino-5-oxopentanoateC5H9NO3		Not available	Average131.1299Da Monoisotopic131.0582432Da

Displaying 1–10 of 52 metabolites