Pediococcus damnosus

Coccus

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus damnosus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCoccus
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbeer; brewery; cider; wine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pediococcus damnosus

Accession NumberJQBD00000000.1

Gene Summary

Adenine Count

677734 bp

Thymine Count

676162 bp

Guanine Count

411835 bp

Cytosine Count

425990 bp

Genome Length

2191735 bp

Protein-coding Genes

2034 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dhh family phosphoesteraseIV84_GL000912A0A0H3GCG4+1091622 - 109364675871.5
50s ribosomal protein l9IV84_GL000913Q03I50+1093652 - 109410416591.2
primary replicative dna helicaseIV84_GL000914P37469+1094205 - 109560251544.6
major facilitator superfamily permeaseIV84_GL000915O34546+1095705 - 109691344732.1
nlpc p60 family proteinIV84_GL000916Not Available+1097198 - 109774318939.2
hypothetical proteinIV84_GL000917Not Available-1097819 - 109818713930.8
extracellular surface proteinIV84_GL000918Not Available+1098712 - 109927219643.9
Trna-lysNot AvailableNot Available+1099524 - 1099596Not Available
vicr proteinIV84_GL000919P37478+1099875 - 110057626830.0
hypothetical proteinIV84_GL000920Q4LAJ8+1100673 - 110244266648.2

Displaying genes 1021 – 1030 of 2134 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

89 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 89 metabolites