Phytopseudomonas straminea

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Phytopseudomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPhytopseudomonas
SpeciesPhytopseudomonas straminea
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatJapanese rice paddies; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phytopseudomonas straminea

Accession NumberFOMO00000000.1

Gene Summary

Adenine Count

926646 bp

Thymine Count

909157 bp

Guanine Count

1564495 bp

Cytosine Count

1591705 bp

Genome Length

4992198 bp

Protein-coding Genes

4529 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trap-type mannitol/chloroaromatic compound transport system, small permease componentSAMN05216372_101570Not Available+624536 - 62508119865.5
trap transporter, dctm subunitSAMN05216372_101571Not Available+625074 - 62645048227.6
glucose-6-phosphate 1-epimeraseSAMN05216372_101572Not Available+626559 - 62745533184.1
gtp-binding proteinSAMN05216372_101573Not Available+627550 - 62819723842.8
dna polymerase iSAMN05216372_101575Not Available-628681 - 631536103395.0
protein of unknown functionSAMN05216372_101576Not Available+631612 - 63189610318.2
homoserine kinaseSAMN05216372_101577Not Available+631909 - 63285935148.2
uncharacterized membrane protein ydjx, tvp38/tmem64 family, snare-associated domainSAMN05216372_101578Not Available+633018 - 63368624277.1
zinc transport system substrate-binding proteinSAMN05216372_101579Not Available-633763 - 63471634119.7
fur family transcriptional regulator, zinc uptake regulatorSAMN05216372_101580Not Available+634869 - 63536917797.5

Displaying genes 631 – 640 of 4631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00031792-hydroxy-4-oxobutane-1,2,4-tricarboxylateC7H5O8Chemical structure of 2-hydroxy-4-oxobutane-1,2,4-tricarboxylateNot available
Average217.111Da
Monoisotopic217.0000879Da
BASm00033374-hydroxy-4-methyl-2-oxoglutarateC6H6O6Chemical structure of 4-hydroxy-4-methyl-2-oxoglutarateNot available
Average174.109Da
Monoisotopic174.0175351Da
BASm0004232(4R)-4-hydroxy-2-oxoglutarateC5H4O6Chemical structure of (4R)-4-hydroxy-2-oxoglutarateNot available
Average160.082Da
Monoisotopic160.001885009Da
BASm0005091(4S)-4-hydroxy-2-oxoglutarateC5H4O6Chemical structure of (4S)-4-hydroxy-2-oxoglutarateNot available
Average160.082Da
Monoisotopic160.001885009Da

Displaying 1–6 of 6 metabolites