Parabacteroides merdae

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae is a Gram-negative, rod-shaped bacterium that thrives in a moderate temperature range, between 22°C and 37°C, categorizing it as a mesophilic microbe. This bacterium is a heterotroph, meaning it derives its energy from the breakdown of organic compounds, specifically glucose and other carbohydrates. It is also a chemoheterotroph, as it uses chemical reactions to convert its energy source into ATP. As a chemoheterotroph, P. merdae produces its energy through the process of cellular respiration, specifically aerobic respiration. This means it requires oxygen to produce energy, classifying it as an obligate aerobe. This microbe is found in various body sites across all species, including the gastrointestinal tract, skin, and respiratory tract, where it plays a crucial role in the breakdown of complex nutrients. P. merdae is known to form biofilms, complex communities of microorganisms attached to surfaces, which enable it to colonize and adapt to its environment. Its ability to form biofilms also allows it to survive in the face of antimicrobial therapy and antibiotics. In addition to its significance in the human body, P. merdae has been found to be involved in various diseases, including inflammatory bowel disease, diarrhea, and even cancer. Its role in these diseases is complex and multifaceted, and further research is needed to fully understand its contribution. Studies have also shown that P. merdae produces adhesins, molecules that allow it to attach to host cells, and has been found to induce inflammation and modulate the immune response. Its ability to interact with the host immune system makes it an important target for future research and potential therapeutic applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae

Accession NumberQSEF00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3278 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
repb family plasmid replication initiator proteinDW030_20415Not Available-4740416 - 474139338866.9
four-helix bundle copper-binding proteinDW030_20420Not Available+4741488 - 47415442260.86
hypothetical proteinDW030_20425Not Available-4741606 - 474187510432.8
xre family transcriptional regulatorDW030_20430Not Available-4741869 - 474218311713.1
type ii toxin-antitoxin system rele/pare family toxinDW030_20435Not Available-4742189 - 474253613733.5
trag family conjugative transposon atpaseDW030_20440Not Available+4742665 - 474324221835.5
duf4141 domain-containing proteinDW030_20445Not Available+4743254 - 47434788082.93
group ii intron reverse transcriptase/maturaseDW030_20450Not Available+4744029 - 474583470838.2
conjugal transfer protein traiDW030_20455Not Available+4745827 - 474636320190.4
conjugative transposon protein trajDW030_20460Not Available+4746383 - 474737836760.0

Displaying genes 22171 – 22180 of 22316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites