Parabacteroides merdae

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae is a Gram-negative, rod-shaped bacterium that thrives in a moderate temperature range, between 22°C and 37°C, categorizing it as a mesophilic microbe. This bacterium is a heterotroph, meaning it derives its energy from the breakdown of organic compounds, specifically glucose and other carbohydrates. It is also a chemoheterotroph, as it uses chemical reactions to convert its energy source into ATP. As a chemoheterotroph, P. merdae produces its energy through the process of cellular respiration, specifically aerobic respiration. This means it requires oxygen to produce energy, classifying it as an obligate aerobe. This microbe is found in various body sites across all species, including the gastrointestinal tract, skin, and respiratory tract, where it plays a crucial role in the breakdown of complex nutrients. P. merdae is known to form biofilms, complex communities of microorganisms attached to surfaces, which enable it to colonize and adapt to its environment. Its ability to form biofilms also allows it to survive in the face of antimicrobial therapy and antibiotics. In addition to its significance in the human body, P. merdae has been found to be involved in various diseases, including inflammatory bowel disease, diarrhea, and even cancer. Its role in these diseases is complex and multifaceted, and further research is needed to fully understand its contribution. Studies have also shown that P. merdae produces adhesins, molecules that allow it to attach to host cells, and has been found to induce inflammation and modulate the immune response. Its ability to interact with the host immune system makes it an important target for future research and potential therapeutic applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae

Accession NumberQSEF00000000.1

Gene Summary

Adenine Count

1264720 bp

Thymine Count

1264835 bp

Guanine Count

1060843 bp

Cytosine Count

1049142 bp

Genome Length

4639540 bp

Protein-coding Genes

3278 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
duf4466 domain-containing proteinDW030_14740Not Available-3475501 - 347649336523.2
hypothetical proteinDW030_14745Not Available-3476509 - 347701218916.9
ragb/susd family nutrient uptake outer membrane proteinDW030_14750Not Available-3477030 - 347891971312.7
susc/raga family tonb-linked outer membrane proteinDW030_14755Not Available-3478931 - 3482338127499.0
duf4974 domain-containing proteinDW030_14760Not Available-3482495 - 348353239555.6
rna polymerase sigma-70 factorDW030_14765Not Available+3483734 - 348428821985.3
tonb-dependent receptorDW030_14770Not Available+3484537 - 3487353104411.0
rhomboid family intramembrane serine proteaseDW030_14775Not Available-3487688 - 348828722481.6
cardiolipin synthaseDW030_14780Not Available+3488444 - 348988354925.5
16s rrna (guanine(966)-n(2))-methyltransferase rsmdDW030_14785Not Available-3489855 - 349041220954.9

Displaying genes 21141 – 21150 of 22316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites