Parabacteroides merdae

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae is a Gram-negative, rod-shaped bacterium that thrives in a moderate temperature range, between 22°C and 37°C, categorizing it as a mesophilic microbe. This bacterium is a heterotroph, meaning it derives its energy from the breakdown of organic compounds, specifically glucose and other carbohydrates. It is also a chemoheterotroph, as it uses chemical reactions to convert its energy source into ATP. As a chemoheterotroph, P. merdae produces its energy through the process of cellular respiration, specifically aerobic respiration. This means it requires oxygen to produce energy, classifying it as an obligate aerobe. This microbe is found in various body sites across all species, including the gastrointestinal tract, skin, and respiratory tract, where it plays a crucial role in the breakdown of complex nutrients. P. merdae is known to form biofilms, complex communities of microorganisms attached to surfaces, which enable it to colonize and adapt to its environment. Its ability to form biofilms also allows it to survive in the face of antimicrobial therapy and antibiotics. In addition to its significance in the human body, P. merdae has been found to be involved in various diseases, including inflammatory bowel disease, diarrhea, and even cancer. Its role in these diseases is complex and multifaceted, and further research is needed to fully understand its contribution. Studies have also shown that P. merdae produces adhesins, molecules that allow it to attach to host cells, and has been found to induce inflammation and modulate the immune response. Its ability to interact with the host immune system makes it an important target for future research and potential therapeutic applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

1260656 bp

Thymine Count

1270019 bp

Guanine Count

1053244 bp

Cytosine Count

1051121 bp

Genome Length

4635236 bp

Protein-coding Genes

3753 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dmt family transporterDW030_13025Not AvailableNegative3085607 - 308652734046.1
fructose-bisphosphatase class iiiDW030_13030Not AvailableNegative3086539 - 308853676527.8
mate family efflux transporterDW030_13035Not AvailableNegative3088540 - 308987748796.1
peptidylprolyl isomeraseDW030_13040Not AvailableNegative3089874 - 309063528635.2
peptidylprolyl isomeraseDW030_13045Not AvailableNegative3090646 - 309132325656.1
hypothetical proteinDW030_13050Not AvailablePositive3091445 - 309273147562.9
nucleotidyltransferaseDW030_13060Not AvailableNegative3093281 - 309419233991.5
alpha-n-arabinofuranosidaseDW030_13065Not AvailableNegative3094338 - 309587657779.9
m13 family peptidaseDW030_13070Not AvailablePositive3096073 - 309811876537.9
duf5020 family proteinDW030_13075Not AvailablePositive3098304 - 309902027493.4

Displaying genes 20811 – 20820 of 22316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total