Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Shewanellaceae
Genus
Shewanella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Shewanellaceae |
| Genus | Shewanella |
| Species | Shewanella benthica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | deep-sea; deepsea; Mariana Trench's Challenger Deep; Tonga-Kermadec subduction zone |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shewanella benthica
Accession NumberNZ_LS483452.1
Gene Summary
Adenine Count
1175565 bp
Thymine Count
1181310 bp
Guanine Count
994413 bp
Cytosine Count
1002217 bp
Genome Length
4353505 bp
Protein-coding Genes
3730 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase factor sigma-54 | SHEWBE_RS04610 | Not Available | - | 993558 - 995042 | 55498.9 |
| lps export abc transporter atp-binding protein | SHEWBE_RS04615 | Not Available | - | 995195 - 995926 | 26973.8 |
| lipopolysaccharide transport periplasmic protein lpta | SHEWBE_RS04620 | Not Available | - | 995923 - 996513 | 21488.6 |
| lps export abc transporter periplasmic protein lptc | SHEWBE_RS04625 | Not Available | - | 996628 - 997185 | 20925.0 |
| 3-deoxy-manno-octulosonate-8-phosphatase kdsc | SHEWBE_RS04630 | Not Available | - | 997182 - 997739 | 20420.6 |
| kpsf/gutq family sugar-phosphate isomerase | SHEWBE_RS19950 | Not Available | - | 997741 - 998718 | 34474.2 |
| calcium/sodium antiporter | SHEWBE_RS19955 | Not Available | - | 998752 - 999711 | 33749.6 |
| atp-binding cassette domain-containing protein | SHEWBE_RS04640 | Not Available | + | 1000158 - 1000976 | 29801.7 |
| lipid asymmetry maintenance abc transporter permease subunit mlae | SHEWBE_RS04645 | Not Available | + | 1001035 - 1001817 | 27853.1 |
| outer membrane lipid asymmetry maintenance protein mlad | SHEWBE_RS04650 | Not Available | + | 1001873 - 1002337 | 16628.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
