Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Shewanellaceae
Genus
Shewanella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Shewanellaceae |
| Genus | Shewanella |
| Species | Shewanella benthica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | deep-sea; deepsea; Mariana Trench's Challenger Deep; Tonga-Kermadec subduction zone |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shewanella benthica
Accession NumberNZ_LS483452.1
Gene Summary
Adenine Count
1175565 bp
Thymine Count
1181310 bp
Guanine Count
994413 bp
Cytosine Count
1002217 bp
Genome Length
4353505 bp
Protein-coding Genes
3730 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | SHEWBE_RS03140 | Not Available | + | 662715 - 663890 | 41302.3 |
| efflux rnd transporter permease subunit | SHEWBE_RS03145 | Not Available | + | 663906 - 667049 | 113318.0 |
| abgt family transporter | SHEWBE_RS03150 | Not Available | - | 667263 - 668849 | 55871.9 |
| lema family protein | SHEWBE_RS03155 | Not Available | + | 669732 - 670301 | 21103.7 |
| lytic transglycosylase domain-containing protein | SHEWBE_RS03160 | Not Available | + | 670417 - 671319 | 33238.9 |
| mate family efflux transporter | SHEWBE_RS03165 | Not Available | - | 671680 - 673119 | 51885.6 |
| lysr family transcriptional regulator | SHEWBE_RS03170 | Not Available | + | 673267 - 674163 | 33539.4 |
| 23s rrna (adenine(2030)-n(6))-methyltransferase rlmj | SHEWBE_RS03175 | Not Available | - | 674233 - 675075 | 31445.8 |
| class i sam-dependent methyltransferase | SHEWBE_RS03180 | Not Available | + | 675259 - 676035 | 28273.4 |
| tyrosine-type recombinase/integrase | SHEWBE_RS03185 | Not Available | + | 676095 - 676190 | 3449.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
