Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Shewanellaceae
Genus
Shewanella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Shewanellaceae |
| Genus | Shewanella |
| Species | Shewanella benthica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | deep-sea; deepsea; Mariana Trench's Challenger Deep; Tonga-Kermadec subduction zone |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shewanella benthica
Accession NumberNZ_LS483452.1
Gene Summary
Adenine Count
1175565 bp
Thymine Count
1181310 bp
Guanine Count
994413 bp
Cytosine Count
1002217 bp
Genome Length
4353505 bp
Protein-coding Genes
3730 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | SHEWBE_RS03040 | Not Available | - | 637513 - 638328 | 30042.7 |
| hypothetical protein | SHEWBE_RS03045 | Not Available | - | 638358 - 638846 | 18374.3 |
| bifunctional molybdopterin-guanine dinucleotide biosynthesis adaptor protein mobb/molybdopterin molybdotransferase moea | SHEWBE_RS03050 | Not Available | - | 639034 - 640833 | 65124.5 |
| molybdenum cofactor guanylyltransferase moba | SHEWBE_RS03055 | Not Available | - | 640848 - 641438 | 21489.0 |
| energy-coupling factor abc transporter atp-binding protein | SHEWBE_RS03060 | Not Available | - | 641422 - 642141 | 26651.2 |
| abc transporter permease | SHEWBE_RS03065 | Not Available | - | 642145 - 642852 | 25591.3 |
| substrate-binding domain-containing protein | SHEWBE_RS03070 | Not Available | - | 642849 - 643661 | 29149.3 |
| sigma-54-dependent transcriptional regulator | SHEWBE_RS03075 | Not Available | + | 643885 - 645315 | 53747.0 |
| cache domain-containing protein | SHEWBE_RS03080 | Not Available | + | 645317 - 647434 | 79588.4 |
| 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | SHEWBE_RS03085 | Not Available | - | 647866 - 648510 | 23967.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
