Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Shewanellaceae
Genus
Shewanella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Shewanellaceae |
| Genus | Shewanella |
| Species | Shewanella benthica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | deep-sea; deepsea; Mariana Trench's Challenger Deep; Tonga-Kermadec subduction zone |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shewanella benthica
Accession NumberNZ_LS483452.1
Gene Summary
Adenine Count
1175565 bp
Thymine Count
1181310 bp
Guanine Count
994413 bp
Cytosine Count
1002217 bp
Genome Length
4353505 bp
Protein-coding Genes
3730 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sodium/glutamate symporter | SHEWBE_RS01775 | Not Available | - | 363627 - 364850 | 43757.6 |
| duf2986 domain-containing protein | SHEWBE_RS01780 | Not Available | - | 365191 - 365343 | 5648.97 |
| tonb-dependent receptor | SHEWBE_RS01785 | Not Available | + | 365658 - 367814 | 79166.7 |
| tigr01621 family pseudouridine synthase | SHEWBE_RS01790 | Not Available | - | 367983 - 368657 | 25274.4 |
| sensor histidine kinase | SHEWBE_RS01795 | Not Available | - | 368753 - 370009 | 46695.7 |
| response regulator transcription factor | SHEWBE_RS01800 | Not Available | - | 370059 - 370736 | 25361.9 |
| hypothetical protein | SHEWBE_RS01805 | Not Available | - | 370746 - 371282 | 20000.1 |
| abc transporter atp-binding protein | SHEWBE_RS01810 | Not Available | - | 371484 - 372593 | 41629.1 |
| molybdate abc transporter permease subunit | SHEWBE_RS01815 | Not Available | - | 372663 - 373343 | 24671.0 |
| molybdate abc transporter substrate-binding protein | SHEWBE_RS01820 | Not Available | - | 373347 - 374180 | 30181.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
