Citrobacter amalonaticus

Gram-negativeFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus is a Gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classified as a mesophilic organism. As a chemoheterotroph, it derives energy and carbon from organic compounds, which it metabolizes in various environments. This microbe is typically found in the gastrointestinal tracts of humans and animals, as well as in soil and water, indicating its widespread presence in the ecosystem. The Gram-negative characteristic of C. amalonaticus signifies that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that contribute to its pathogenic potential and immune evasion. Its rod shape allows for efficient movement and colonization in diverse environments, enhancing its survival abilities. As a mesophile, C. amalonaticus prefers moderate temperatures, typically between 20°C and 45°C, making it well-suited for life in warm-blooded hosts. Being a chemoheterotroph, C. amalonaticus relies on organic compounds for both energy and carbon, allowing it to thrive in nutrient-rich environments such as the intestinal flora. This microbe is classified as a facultative anaerobe, which means it can grow in both the presence and absence of oxygen. This adaptability is crucial for its survival in the host gut, where oxygen levels may vary significantly. Citrobacter amalonaticus is also recognized for its potential pathogenicity, as it can be associated with urinary tract infections and other opportunistic infections, particularly in immunocompromised individuals. Its ability to produce certain enzymes, such as urease, contributes to its pathogenic profile. Furthermore, the microbe plays a role in biogeochemical cycling, particularly in nitrogen transformations, highlighting its ecological significance beyond human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus

Accession NumberNZ_CP014015.2

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4435 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
l-cystine abc transporter atp-binding protein tcynAL479_RS23495Not Available-4859802 - 486055427639.7
cystine abc transporter permeaseAL479_RS23500Not Available-4860551 - 486121924783.8
d-cysteine desulfhydraseAL479_RS23505Not Available-4861235 - 486222135087.3
cystine abc transporter substrate-binding proteinAL479_RS23510Not Available-4862330 - 486313028905.9
flagella biosynthesis regulatory protein flizAL479_RS23515Not Available-4863218 - 486376921639.9
rna polymerase sigma factor fliaAL479_RS23520Not Available-4863829 - 486454827550.8
flic/fljb family flagellinAL479_RS23525Not Available-4864711 - 486598843994.7
flagellar filament capping protein flidAL479_RS23530Not Available+4866298 - 486771650173.5
flagellar export chaperone flisAL479_RS23535Not Available+4867727 - 486813414723.6
flagella biosynthesis regulatory protein flitAL479_RS23540Not Available+4868134 - 486850213810.5

Displaying genes 4561 – 4570 of 4609 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da

Displaying 1–10 of 83 metabolites