Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava str. CFBP13507
Accession NumberQFZY00000000.1
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| effector protein | PviCFBP13507_04210 | Not Available | - | 969880 - 970827 | 35363.5 |
| type iii effector | PviCFBP13507_04215 | Not Available | + | 971190 - 972626 | 50075.5 |
| type iii effector hrpk | PviCFBP13507_04220 | Not Available | - | 972694 - 973935 | 41727.8 |
| type iii chaperone shcm | PviCFBP13507_04225 | Not Available | + | 974230 - 974727 | 18363.8 |
| cest family type iii secretion system chaperone | PviCFBP13507_04235 | Not Available | + | 977283 - 977672 | 14212.9 |
| avre family type 3 secretion system effector | PviCFBP13507_04240 | Not Available | - | 977730 - 982952 | 189383.0 |
| lytic transglycosylase | PviCFBP13507_04245 | Not Available | + | 983173 - 984702 | 55859.7 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_04250 | Not Available | + | 985785 - 986720 | 34623.8 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_04255 | Not Available | + | 986767 - 987678 | 33593.6 |
| hypothetical protein | PviCFBP13507_04260 | Not Available | + | 987773 - 988099 | 11297.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
