Clavibacter sepedonicus

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter sepedonicus is a Gram-positive, rod-shaped bacterium that typically exhibits a cell arrangement consisting of pairs and singles. This microbe thrives optimally at a temperature of 25.0°C and is classified as an aerobe, requiring oxygen for growth. The habitat of Clavibacter sepedonicus is diverse, indicating its adaptability to various environmental conditions. Its rod morphology and aerobic nature suggest that it may play a role in specific ecological niches where oxygen is readily available, allowing for unique interactions with other microorganisms and potential host organisms. Understanding the growth conditions and structural characteristics of Clavibacter sepedonicus can contribute to insights into its ecological roles, particularly in terrestrial environments where oxygen levels fluctuate. Its ability to thrive in varied habitats may also inform studies on microbial diversity and resilience in changing ecological landscapes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter sepedonicus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Clavibacter sepedonicus
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter sepedonicus

Accession NumberNC_010408.1

Gene Summary

Adenine Count

14556 bp

Thymine Count

14977 bp

Guanine Count

33265 bp

Cytosine Count

31993 bp

Genome Length

94791 bp

Protein-coding Genes

83416 genes

Non-Coding Genes

11375 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
pyridoxal 5'-phosphate synthase lyase subunit pdxsCMS_RS03590Q6AFB9+759202 - 76010431563.9
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtCMS_RS03595B0REB6+760094 - 76072321754.2
yebc/pmpr family dna-binding transcriptional regulatorCMS_RS03600B0REB7+760800 - 76156727405.1
crossover junction endodeoxyribonuclease ruvcCMS_RS03605B0REB8+761619 - 76223320988.2
holliday junction branch migration protein ruvaCMS_RS03610B0REB9+762251 - 76289521965.5
holliday junction branch migration dna helicase ruvbCMS_RS03615A5CS06+762892 - 76397138309.2
preprotein translocase subunit yajcCMS_RS03620Not Available+764048 - 76443113689.3
protein translocase subunit secdCMS_RS03625Q53955+764558 - 76636962635.6
protein translocase subunit secfCMS_RS03630Q53956+766369 - 76737935558.8
rhodanese-like domain-containing proteinCMS_RS03635Not Available+767376 - 76773512369.3

Displaying genes 901 – 910 of 3308 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002726(E)-3-(methoxycarbonyl)pent-2-enedioateC7H6O6Chemical structure of (E)-3-(methoxycarbonyl)pent-2-enedioateNot available
Average186.1189Da
Monoisotopic186.0164379Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm00033514-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PSChemical structure of 4-methyl-5-(2-phosphooxyethyl)-thiazoleNot available
Average221.17Da
Monoisotopic220.9922631Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm00035853''-O-adenylylstreptomycinC31H53N12O18PChemical structure of 3''-O-adenylylstreptomycinNot available
Average912.804Da
Monoisotopic912.332742753Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da

Displaying 1–10 of 17 metabolites