Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium rubi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium rubi
Accession NumberLXKU00000000.1
Gene Summary
Adenine Count
1183097 bp
Thymine Count
1172902 bp
Guanine Count
1576030 bp
Cytosine Count
1577043 bp
Genome Length
5510033 bp
Protein-coding Genes
5005 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2-hydroxychromene-2-carboxylate isomerase | A6U92_19770 | Not Available | - | 5212374 - 5212967 | 22625.9 |
| fad-dependent oxidoreductase | A6U92_19775 | Q8PDQ6 | - | 5212979 - 5214445 | 53850.1 |
| spermidine/putrescine abc transporter atp-binding protein | A6U92_19780 | Q47T99 | - | 5214502 - 5215572 | 39189.1 |
| spermidine/putrescine abc transporter permease | A6U92_19785 | P0AFK8 | - | 5215577 - 5216368 | 28884.3 |
| spermidine/putrescine abc transporter permease | A6U92_19790 | Not Available | - | 5216379 - 5217347 | 34991.9 |
| spermidine/putrescine abc transporter substrate-binding protein | A6U92_19795 | Not Available | - | 5217448 - 5218548 | 40119.4 |
| lysr family transcriptional regulator | A6U92_19800 | Not Available | - | 5218635 - 5219639 | 35891.6 |
| nad/nadp octopine/nopaline dehydrogenase | A6U92_19805 | Not Available | + | 5220048 - 5221127 | 37883.4 |
| l-asparaginase | A6U92_19810 | P30363 | - | 5221611 - 5222594 | 34442.2 |
| hypothetical protein | A6U92_19815 | Not Available | + | 5222845 - 5223486 | 23549.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
