Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium yanoikuyae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium yanoikuyae str. B1
Accession NumberJGVR00000000.1
Gene Summary
Adenine Count
1022489 bp
Thymine Count
1027075 bp
Guanine Count
1806749 bp
Cytosine Count
1827474 bp
Genome Length
5683787 bp
Protein-coding Genes
5291 genes
Non-Coding Genes
99 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | CP98_00589 | Not Available | + | 630300 - 630986 | 24370.1 |
| diguanylate cyclase (ggdef) domain-containing protein | CP98_00590 | Not Available | - | 630975 - 632780 | 67244.3 |
| na+/phosphate symporter | CP98_00591 | Not Available | - | 632845 - 634017 | 41150.0 |
| dna polymerase iii, alpha subunit | CP98_00592 | Not Available | + | 634165 - 637707 | 130064.0 |
| hypothetical protein | CP98_00593 | Not Available | + | 637741 - 638151 | 14865.4 |
| putative amidohydrolase | CP98_00594 | Not Available | + | 638192 - 639166 | 35105.9 |
| acetyltransferase (gnat) family protein | CP98_00595 | Not Available | + | 639163 - 639753 | 21586.6 |
| pyridoxal-5'-phosphate-dependent protein subunit beta | CP98_00596 | Not Available | + | 639877 - 640947 | 39955.1 |
| nad(p)h-nitrite reductase | CP98_00597 | Not Available | - | 640999 - 642225 | 43697.1 |
| mreb/mrl family cell shape determining protein | CP98_00598 | Not Available | - | 642349 - 643386 | 36369.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.