Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium yanoikuyae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium yanoikuyae str. Sphingobium yanoikuyae SJTF8
Accession NumberNZ_CP033230.1
Gene Summary
Adenine Count
917543 bp
Thymine Count
928555 bp
Guanine Count
1673236 bp
Cytosine Count
1653443 bp
Genome Length
5172777 bp
Protein-coding Genes
4749 genes
Non-Coding Genes
192 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system vapc family toxin | EBF16_RS04575 | Not Available | + | 119004 - 119393 | 13950.7 |
| alpha/beta hydrolase family protein | EBF16_RS04580 | Not Available | + | 119416 - 120312 | 31208.2 |
| thymidine kinase | EBF16_RS04585 | Not Available | + | 120322 - 120900 | 21072.2 |
| gnat family n-acetyltransferase | EBF16_RS04590 | Not Available | + | 120897 - 121448 | 20207.3 |
| had family hydrolase | EBF16_RS04595 | Not Available | - | 121452 - 122147 | 25192.3 |
| trna pseudouridine(55) synthase trub | EBF16_RS04600 | Not Available | + | 122259 - 123167 | 32121.1 |
| 30s ribosomal protein s15 | EBF16_RS04605 | Not Available | + | 123185 - 123454 | 10234.5 |
| polyribonucleotide nucleotidyltransferase | EBF16_RS04610 | Not Available | + | 123657 - 125972 | 83037.3 |
| sensor histidine kinase | EBF16_RS04615 | Not Available | + | 126120 - 127139 | 36995.4 |
| outer membrane protein assembly factor bamd | EBF16_RS04620 | Not Available | + | 127207 - 127995 | 29858.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.