Pimelobacter simplex str. VKM Ac-2033D

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex strain VKM Ac-2033D is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in aerobic environments. This microbe has been isolated from diverse habitats, including deteriorated mural paintings, oil-contaminated soil and sea sediment, as well as the rhizosphere and roots of pine trees. The presence of Pimelobacter simplex in oil-contaminated environments suggests a potential role in biodegradation processes, where it may contribute to the breakdown of hydrocarbons. Its association with pine tree rhizospheres indicates possible interactions with plant roots, which may facilitate nutrient exchange or influence microbial community dynamics in forest ecosystems. Overall, the adaptability of Pimelobacter simplex to various environments, particularly those impacted by anthropogenic activities, highlights its potential significance in bioremediation efforts and the maintenance of ecological balance in contaminated sites. Further research into its metabolic pathways could provide insights into its functional roles within these diverse habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex str. VKM Ac-2033D

Accession NumberNZ_CP009896.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5473 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
daunorubicin resistance protein drra family abc transporter atp-binding proteinKR76_RS26570Not Available+5424484 - 542545834423.1
abc transporter permeaseKR76_RS26575Not Available+5425464 - 542625528602.4
hypothetical proteinKR76_RS26580Not Available+5426322 - 542677716387.2
fad-dependent oxidoreductaseKR76_RS26585Not Available-5426805 - 542818146993.3
cytochrome p450KR76_RS26590Not Available-5428184 - 542951248156.2
hypothetical proteinKR76_RS26595Not Available-5429610 - 543033225011.2
had family hydrolaseKR76_RS26600Not Available+5430331 - 543112227590.3
glycoside hydrolase family 65 proteinKR76_RS26605Not Available+5431119 - 543365694055.5
amidaseKR76_RS26610Not Available-5433810 - 543523450205.7
aerobic carbon-monoxide dehydrogenase large subunitKR76_RS26615Not Available-5435231 - 543766687496.2

Displaying genes 5401 – 5410 of 5621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–2 of 2 metabolites