Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber str. R1

Accession NumberNZ_CP038030.2

Gene Summary

Adenine Count

786417 bp

Thymine Count

786676 bp

Guanine Count

1890309 bp

Cytosine Count

1889220 bp

Genome Length

5352622 bp

Protein-coding Genes

4843 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sdr family oxidoreductaseE2561_RS02925Not Available+626708 - 62774837180.8
aspartate aminotransferase family proteinE2561_RS02930Not Available+627745 - 62898643187.9
type ii toxin-antitoxin system rata family toxinE2561_RS02935Not Available+629010 - 62946816529.5
bifunctional lysylphosphatidylglycerol flippase/synthetase mprfE2561_RS02940Not Available+629465 - 63049037751.0
nad(p)/fad-dependent oxidoreductaseE2561_RS02945Not Available+630502 - 63190250262.2
nad(p)/fad-dependent oxidoreductaseE2561_RS02950Not Available+631899 - 63331452444.8
alpha/beta fold hydrolaseE2561_RS02955Not Available+633316 - 63422133161.9
alpha/beta fold hydrolaseE2561_RS02960Not Available+634211 - 63513133392.1
nad(p)/fad-dependent oxidoreductaseE2561_RS02965Not Available+635136 - 63692667200.5
cation:proton antiporterE2561_RS02970Not Available+636936 - 63827944973.8

Displaying genes 591 – 600 of 4911 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites