Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber str. R1

Accession NumberNZ_CP038030.2

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4843 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
winged helix-turn-helix domain-containing proteinE2561_RS23545Not Available-5183501 - 518401318724.6
flavin reductase family proteinE2561_RS23550Not Available-5184115 - 518467820116.6
nadph-dependent oxidoreductaseE2561_RS23555Not Available-5184910 - 518573730031.5
llm class flavin-dependent oxidoreductaseE2561_RS23560Not Available-5185832 - 518695041191.8
isopenicillin n synthase family dioxygenaseE2561_RS23565Not Available+5187449 - 518851338379.4
metq/nlpa family abc transporter substrate-binding proteinE2561_RS23570Not Available+5188510 - 518934929367.3
methionine abc transporter atp-binding proteinE2561_RS23575Not Available+5189346 - 519035635624.8
methionine abc transporter permeaseE2561_RS23580Not Available+5190353 - 519102123211.3
yeih family proteinE2561_RS23585Not Available+5191141 - 519218434698.6
gamma-glutamyltransferaseE2561_RS23590Not Available+5192354 - 519431567295.4

Displaying genes 4761 – 4770 of 4911 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites