Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber str. R1

Accession NumberNZ_CP038030.2

Gene Summary

Adenine Count

786417 bp

Thymine Count

786676 bp

Guanine Count

1890309 bp

Cytosine Count

1889220 bp

Genome Length

5352622 bp

Protein-coding Genes

4843 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
alpha/beta hydrolaseE2561_RS22150Not Available+4892601 - 489343729890.8
4,5-dopa dioxygenase extradiolE2561_RS22155Not Available+4893463 - 489430530119.3
alpha/beta hydrolaseE2561_RS22160Not Available-4894419 - 489539635940.3
alkaline phosphatase family proteinE2561_RS22165Not Available-4895462 - 489659540314.0
muconolactone delta-isomeraseE2561_RS22170Not Available-4896620 - 489690711271.5
muconate/chloromuconate family cycloisomeraseE2561_RS22175Not Available-4896978 - 489810539708.9
catechol 1,2-dioxygenaseE2561_RS22180Not Available-4898233 - 489908431701.9
iclr family transcriptional regulator c-terminal domain-containing proteinE2561_RS22185Not Available+4899282 - 490005227389.8
arac family transcriptional regulatorE2561_RS22190Not Available-4900059 - 490100934456.8
flavin reductase family proteinE2561_RS22200Not Available+4901399 - 490196220090.6

Displaying genes 4481 – 4490 of 4911 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites