Bifidobacterium bifidum str. TMC 3115

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium bifidum strain TMC 3115 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, typically associated with the gastrointestinal tracts of various hosts. This species is part of the Bifidobacteriaceae family and is known for its role as a beneficial microbe within the gut microbiome, contributing to the maintenance of gut health and the modulation of the immune system. B. bifidum str. TMC 3115 is adapted to its host-associated habitat, where it engages in fermentative metabolism, utilizing carbohydrates to produce short-chain fatty acids that are pivotal for colonic health. Its anaerobic requirement indicates a preference for environments devoid of oxygen, which aligns with the conditions found in the intestines of mammals. The presence of B. bifidum in the gut microbiota is associated with various beneficial effects, including the enhancement of nutrient absorption and the inhibition of pathogenic microbes, although the precise mechanisms of action and the full spectrum of its interactions within the microbiome remain areas of ongoing research. Understanding the specialized adaptations of B. bifidum str. TMC 3115 enhances our knowledge of gut microbiota composition and its implications for host health, particularly in the context of probiotic applications and gut microbiome modulation.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium bifidum
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Bifidobacterium bifidum str. TMC 3115
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium bifidum str. TMC 3115

Accession NumberNZ_AP018132.1

Gene Summary

Adenine Count

407115 bp

Thymine Count

403700 bp

Guanine Count

684818 bp

Cytosine Count

683261 bp

Genome Length

2178894 bp

Protein-coding Genes

1759 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
duf6350 family proteinBBTM_RS01490Not Available-343793 - 34515448441.6
succinate--coa ligase subunit alphaBBTM_RS01495Not Available-345151 - 34607731581.2
adp-forming succinate--coa ligase subunit betaBBTM_RS01500Not Available-346074 - 34727942907.5
adenine phosphoribosyltransferaseBBTM_RS01505Not Available-347364 - 34794520248.7
preprotein translocase subunit yajcBBTM_RS01510Not Available-347963 - 34838815761.4
holliday junction branch migration dna helicase ruvbBBTM_RS01515Not Available-348449 - 34953439090.9
holliday junction branch migration protein ruvaBBTM_RS01520Not Available-349541 - 35015821444.8
crossover junction endodeoxyribonuclease ruvcBBTM_RS01525Not Available-350334 - 35091520490.0
yebc/pmpr family dna-binding transcriptional regulatorBBTM_RS01530Not Available-350922 - 35168027202.6
family 20 glycosylhydrolaseBBTM_RS01535Not Available-351961 - 355143113315.0

Displaying genes 301 – 310 of 1823 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites