Clostridium beijerinckii str. NCIMB 14988

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium beijerinckii str. NCIMB 14988 is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as single cells. This microorganism is classified as a chemoorganotroph, utilizing organic compounds as its energy source. C. beijerinckii str. NCIMB 14988 thrives in anaerobic environments, which aligns with its strict requirement for the absence of oxygen. Its natural habitats include freshwater systems and soil, where it can contribute to the nutrient cycling processes. The anaerobic nature of C. beijerinckii str. NCIMB 14988 allows it to play a significant role in the degradation of organic matter, particularly in environments rich in decaying plant material. This metabolic capability may enhance soil fertility and influence the microbial community structure within its habitats. Furthermore, the bacterium’s ability to survive in pairs or as single entities may confer advantages in its interactions with other microorganisms, potentially facilitating cooperative metabolic activities or competition for resources in its ecological niche. Understanding the traits and behaviors of this strain can provide insights into its functional contributions to microbial ecosystems, particularly in anaerobic conditions where organic material is abundant.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium beijerinckii
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridium beijerinckii str. NCIMB 14988
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water - Soil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridium beijerinckii str. NCIMB 14988

Accession NumberNZ_CP010086.2

Gene Summary

Adenine Count

2285740 bp

Thymine Count

2253892 bp

Guanine Count

982364 bp

Cytosine Count

963398 bp

Genome Length

6485394 bp

Protein-coding Genes

5649 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
nad(p)/fad-dependent oxidoreductaseLF65_RS00025A0A0R3K2G2+1308 - 269351888.8
duf1667 domain-containing proteinLF65_RS00030Not Available+2710 - 29378522.51
Trna-serNot AvailableNot Available+3057 - 3147Not Available
Trna-serNot AvailableNot Available+3178 - 3268Not Available
Trna-serNot AvailableNot Available+3510 - 3600Not Available
Trna-serNot AvailableNot Available+3619 - 3709Not Available
gnat family n-acetyltransferaseLF65_RS00055Not Available+3835 - 435020120.6
helicase-exonuclease addab subunit addbLF65_RS00060A6LPC3+4347 - 7826135147.0
helicase-exonuclease addab subunit addaLF65_RS00065A6LPC4+7919 - 11656144470.0
l,d-transpeptidaseLF65_RS00070Not Available-11727 - 1290845241.3

Displaying genes 41 – 50 of 5825 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

203 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 203 metabolites