Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Clostridioides
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Peptostreptococcales |
| Family | Peptostreptococcaceae |
| Genus | Clostridioides |
| Species | Clostridioides difficile |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 1 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Chains - Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Chemoorganotroph |
| Pathogenicity | Human |
Genome Summary
Clostridioides difficile str. RA09_70
Accession NumberJPPA00000000.1
Gene Summary
Adenine Count
1519866 bp
Thymine Count
1506247 bp
Guanine Count
608909 bp
Cytosine Count
597184 bp
Genome Length
4232226 bp
Protein-coding Genes
3643 genes
Non-Coding Genes
111 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| integrase | IM33_00605 | P19769 | - | 95341 - 96150 | 32378.0 |
| hypothetical protein | IM33_00610 | Not Available | - | 96222 - 96746 | 20020.3 |
| endonuclease | IM33_00615 | Not Available | + | 96800 - 97093 | 10928.0 |
| conjugal transfer protein | IM33_00620 | Not Available | + | 97168 - 97401 | 8679.46 |
| membrane protein | IM33_00625 | Not Available | + | 97406 - 97601 | 7745.67 |
| merr family transcriptional regulator | IM33_00630 | Not Available | - | 97602 - 97710 | 4339.27 |
| transposase | IM33_00640 | Not Available | - | 98538 - 98704 | 6490.76 |
| dna invertase | IM33_00645 | Q60329 | - | 98676 - 99177 | 19855.6 |
| endonuclease | IM33_00655 | Q48722 | - | 99830 - 100691 | 32182.2 |
| mobilization protein | IM33_00660 | Not Available | - | 100652 - 100981 | 12668.6 |
Pathways
1 pathway
No pathways found
No metabolic pathways have been associated with this bacterium yet.