Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Clostridioides
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Peptostreptococcales |
| Family | Peptostreptococcaceae |
| Genus | Clostridioides |
| Species | Clostridioides difficile |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 1 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Chains - Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Chemoorganotroph |
| Pathogenicity | Human |
Genome Summary
Clostridioides difficile str. RA09_70
Accession NumberJPPA00000000.1
Gene Summary
Adenine Count
1519866 bp
Thymine Count
1506247 bp
Guanine Count
608909 bp
Cytosine Count
597184 bp
Genome Length
4232226 bp
Protein-coding Genes
3643 genes
Non-Coding Genes
111 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cation transporter | IM33_10045 | Q9WZ31 | + | 2051057 - 2052013 | 37408.8 |
| 3-deoxy-7-phosphoheptulonate synthase | IM33_10055 | Q9WYH8 | + | 2052475 - 2053488 | 36718.7 |
| 3-dehydroquinate synthase | IM33_10060 | B2UYK8 | + | 2053510 - 2054574 | 40046.9 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | IM33_10065 | Q187E3 | + | 2054574 - 2055887 | 48916.1 |
| chorismate synthase | IM33_10070 | E3PV41 | + | 2055865 - 2056944 | 39117.1 |
| phea | IM33_10075 | Q8K9F8 | + | 2056947 - 2058143 | 46439.6 |
| shikimate dehydrogenase | IM33_10080 | A6M251 | + | 2058189 - 2058998 | 29958.7 |
| shikimate kinase | IM33_10085 | A6M250 | + | 2059010 - 2059543 | 20178.4 |
| prephenate dehydrogenase | IM33_10090 | Q2FYS1 | + | 2059564 - 2060403 | 31337.0 |
| diguanylate phosphodiesterase | IM33_10095 | O34311 | + | 2061467 - 2062849 | 53060.6 |
Pathways
1 pathway
No pathways found
No metabolic pathways have been associated with this bacterium yet.