Clostridioides difficile

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Clostridioides difficile

Accession NumberCAAJMV000000000.1

Gene Summary

Adenine Count

1521917 bp

Thymine Count

1576850 bp

Guanine Count

584417 bp

Cytosine Count

633911 bp

Genome Length

4317273 bp

Protein-coding Genes

3615 genes

Non-Coding Genes

410 genes

# of Chromosomes/Plasmids

37

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter permeaseSAMEA747647_00584Not Available+606677 - 60883982770.0
abc transporter atp-binding proteinSAMEA747647_00585Not Available+608844 - 60946123391.4
putative phosphonoacetate hydrolaseSAMEA747647_00586Not Available+609650 - 60999412339.6
pentapeptide repeat-containing proteinSAMEA747647_00587Not Available+610564 - 61143032369.5
ymaf familySAMEA747647_00588Not Available+611543 - 61194715487.0
acyl-coa n-acyltransferaseSAMEA747647_00589Not Available+612123 - 61257217216.0
3-demethylubiquinone-9 3-methyltransferaseSAMEA747647_00590Not Available-612728 - 61310513680.3
predicted zn-dependent protease (duf2268)SAMEA747647_00591Not Available+613376 - 61428434992.3
fad-linked oxidaseSAMEA747647_00592Not Available-614457 - 61584851479.1
electron transfer flavoprotein subunit alphaSAMEA747647_00593Not Available-615859 - 61707944996.9

Displaying genes 881 – 890 of 11846 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites