Clostridioides difficile

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Clostridioides difficile

Accession NumberCAAJMV000000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3615 genes

Non-Coding Genes

410 genes

# of Chromosomes/Plasmids

37

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter atp-binding proteinSAMEA747647_00332Not Available+353129 - 35400133198.4
abc-2 family transporter proteinSAMEA747647_00333Not Available+354002 - 35479030795.9
uncharacterised proteinSAMEA747647_00334Not Available-354886 - 35552424698.8
domain of uncharacterised function (duf3786)SAMEA747647_00335Not Available-355551 - 35618024443.2
ytxh-like proteinSAMEA747647_00336Not Available+356450 - 35683313984.0
lipoproteinSAMEA747647_00337Not Available+356835 - 35718512877.0
uncharacterised proteinSAMEA747647_00338Not Available-357286 - 35774418103.3
cell wall hydrolase (endolysin)SAMEA747647_00339Not Available-357789 - 35857728577.1
phage-related deoxycytidylate deaminaseSAMEA747647_00340Not Available-358716 - 35915316558.9
uncharacterised proteinSAMEA747647_00341Not Available-359387 - 3595215062.3

Displaying genes 631 – 640 of 11846 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites