Clostridioides difficile

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Clostridioides difficile

Accession NumberCAAJMV000000000.1

Gene Summary

Adenine Count

1521917 bp

Thymine Count

1576850 bp

Guanine Count

584417 bp

Cytosine Count

633911 bp

Genome Length

4317273 bp

Protein-coding Genes

3615 genes

Non-Coding Genes

410 genes

# of Chromosomes/Plasmids

37

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
putative transmembrane proteinSAMEA747647_00779Not Available-801218 - 80248050185.9
ksga/dim1 family 16s ribosomal rna methyltransferaseSAMEA747647_00780Not Available-802546 - 80341532432.3
dna-binding proteinSAMEA747647_00781Not Available-803586 - 80411619615.7
abc transporter iron-family extracellular solute-binding proteinSAMEA747647_00782Not Available-804308 - 80537538993.7
iron abc transporter atp-binding proteinSAMEA747647_00783Not Available-805539 - 8056554756.74
nitroreductaseSAMEA747647_00784Not Available-806307 - 80681919678.0
phosphoribosylaminoimidazole carboxylase catalytic subunitSAMEA747647_00785Not Available+807269 - 80774517123.2
phosphoribosylaminoimidazolesuccinocarboxamide synthaseSAMEA747647_00786Not Available+807751 - 80844926704.1
amidophosphoribosyltransferaseSAMEA747647_00787Not Available+808461 - 80982850771.1
phosphoribosylaminoimidazole synthetaseSAMEA747647_00788Not Available+809822 - 81089838906.0

Displaying genes 1021 – 1030 of 11846 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites