Clostridium cochlearium

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium cochlearium
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatpit mud; silage
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium cochlearium

Accession NumberFNGL00000000.1

Gene Summary

Adenine Count

869942 bp

Thymine Count

852263 bp

Guanine Count

343929 bp

Cytosine Count

334378 bp

Genome Length

2400722 bp

Protein-coding Genes

2331 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinSAMN05216497_11621Not Available+1801260 - 180223435633.1
putative cell wall-binding proteinSAMN05216497_11622Not Available+1802258 - 180373353405.0
capsular polysaccharide biosynthesis proteinSAMN05216497_11623Not Available+1803757 - 180444325413.5
protein-tyrosine phosphataseSAMN05216497_11624Not Available+1804457 - 180523929871.7
capsular exopolysaccharide familySAMN05216497_11625Not Available+1805241 - 180598727555.2
ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epscSAMN05216497_11626Not Available+1806551 - 180842270609.8
o-antigen biosynthesis protein wbqpSAMN05216497_11627Not Available+1808441 - 180906123561.3
udp-glucose 4-epimeraseSAMN05216497_11628Not Available+1809323 - 181010229441.8
glycosyltransferase involved in cell wall bisynthesisSAMN05216497_11629Not Available+1810168 - 181096230668.0
glycosyltransferase involved in cell wall bisynthesisSAMN05216497_11630Not Available+1811042 - 181210040585.4

Displaying genes 1811 – 1820 of 2393 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0003659(2S,3S)-3-methyl-L-aspartateC5H8NO4Chemical structure of (2S,3S)-3-methyl-L-aspartateNot available
Average146.123Da
Monoisotopic146.0458813Da

Displaying 1–1 of 1 metabolites