Bacillus mycoides str. DB-1

Gram-positiveRodFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus mycoides strain DB-1 is a Gram-positive, rod-shaped bacterium that has been isolated from the deep sea, specifically from the Iheya Ridge hydrothermal vent field in the Okinawa Trough. As a facultative anaerobe, this microbe is capable of surviving in both aerobic and anaerobic environments, which may confer an ecological advantage in the extreme conditions typically found at hydrothermal vents, where oxygen levels can fluctuate significantly. The habitat of Bacillus mycoides str. DB-1 suggests its potential involvement in biogeochemical cycles within deep-sea ecosystems, as hydrothermal vents are known to host unique microbial communities that contribute to nutrient cycling under high-pressure and high-temperature conditions. The ability of this strain to thrive in such an environment may indicate its adaptation to utilize diverse energy sources available in the vent ecosystem. Further research into the metabolic pathways and ecological roles of Bacillus mycoides str. DB-1 could provide insights into the microbial dynamics of extreme habitats and their contributions to the overall health and functioning of deep-sea environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus mycoides
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Bacillus mycoides str. DB-1

Accession NumberQTTY00000000.1

Gene Summary

Adenine Count

1890671 bp

Thymine Count

1862314 bp

Guanine Count

1046730 bp

Cytosine Count

993919 bp

Genome Length

5794236 bp

Protein-coding Genes

5724 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
uncharacterized protein ybbk (duf523 family)DET55_12481Not Available-4303696 - 430415716718.9
deor family transcriptional regulatorDET55_12482Not Available+4304238 - 430511933508.7
mfs transporterDET55_12483Not Available-4305137 - 430638445582.5
putative transcriptional regulator ydeeDET55_12484Not Available-4306560 - 430703618217.4
thioredoxin reductase (nadph)DET55_12485Not Available-4307202 - 430819136470.8
nadh dehydrogenaseDET55_12486Not Available+4308656 - 430986444382.7
adp-ribose pyrophosphatase yjhb (nudix family)DET55_12487Not Available+4309984 - 431049018835.5
yuib-like putative membrane proteinDET55_12488Not Available+4310487 - 431080411743.1
3d (asp-asp-asp) domain-containing proteinDET55_12489Not Available+4310891 - 431151723412.4
leucyl aminopeptidaseDET55_12490Not Available+4311794 - 431327853579.0

Displaying genes 4371 – 4380 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites