Cytobacillus firmus str. LK28

RodNon-motile

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Cytobacillus

Description

Cytobacillus firmus strain LK28 is a rod-shaped, nonsporulating bacterium that exhibits chemoheterotrophic metabolism, utilizing organic compounds as its energy source. This organism thrives optimally at a temperature of 35.0°C, suggesting a preference for mesophilic conditions that are commonly found in various environments. The habitat of Cytobacillus firmus str. LK28 is noted to be diverse, indicating its potential adaptability to multiple ecological niches. Its nonsporulating nature may reflect its reliance on stable environmental conditions for growth and survival, as opposed to sporulating bacteria, which often employ spores as a strategy for enduring hostile environments. The metabolic capabilities of C. firmus LK28 as a chemoheterotroph suggest its role in nutrient cycling within its habitats, as it likely contributes to the breakdown of organic matter. This functional trait could position it as an important player in microbial communities, where it may interact with other microorganisms, influencing the dynamics of nutrient availability and ecosystem health. Further exploration into its ecological interactions could unveil deeper insights into its role within specific microbiomes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusCytobacillus
SpeciesCytobacillus firmus
StrainLK28

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Cytobacillus firmus str. LK28
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Corchorus olitorius
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Cytobacillus firmus str. LK28


Gene Summary

Adenine Count

1360589 bp

Thymine Count

1378289 bp

Guanine Count

983147 bp

Cytosine Count

995959 bp

Genome Length

4717984 bp

Protein-coding Genes

4494 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna primaseVL14_18315P05096Negative3721817 - 372363169310.1
phosphotransferaseVL14_18325A7Z6T8Negative3724439 - 372525730733.4
transcriptional repressor ccpnVL14_18330O34994Negative3725286 - 372592123580.1
glycine-trna synthetase subunit betaVL14_18335P54381Negative3726177 - 372824978272.5
hypothetical proteinVL14_18340A8FFB1Negative3728242 - 372913234491.7
dna recombination protein recoVL14_18345P42095Negative3729509 - 373026128505.5
gtpase eraVL14_18350P42182Negative3730593 - 373150735065.6
cytidine deaminaseVL14_18355P19079Negative3731500 - 373189814354.2
diacylglycerol kinaseVL14_18360P19638Negative3732286 - 373267814349.1
rrna maturation factorVL14_18365B7HCS7Negative3732656 - 373312617951.1

Displaying genes 3591 – 3600 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

496 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000549cis-1,2-dihydrobenzene-1,2-diolC6H8O2Chemical structure of cis-1,2-dihydrobenzene-1,2-diolNot available
Average112.128Da
Monoisotopic112.0524295Da

Displaying 1–10 of 496 metabolites

Health Effects

No health effects information available for this bacterium.