Dermacoccus nishinomiyaensis str. M25

Gram-positiveCocciAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermacoccaceae

Genus

Dermacoccus

Description

Dermacoccus nishinomiyaensis strain M25 is a Gram-positive, aerobic coccus that exhibits notable resilience in its environmental niche. This microorganism is characterized by its spherical shape, which is typical of many members of the genus Dermacoccus. As an aerobic organism, D. nishinomiyaensis strain M25 necessitates oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, which is a common feature among many cocci and contributes to its structural integrity. While the specific habitat and ecological roles of D. nishinomiyaensis strain M25 have not been detailed, its classification suggests a potential adaptability to varied environments, possibly including soil or surfaces where organic matter is present. The unique combination of traits exhibited by D. nishinomiyaensis strain M25 may indicate a role in the degradation of organic materials or in interactions with other microbial communities, though further research would be necessary to elucidate its precise ecological function. This strain could potentially serve as a model for studying aerobic, Gram-positive cocci in microbiological research, contributing to a better understanding of microbial diversity and functionality in various ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermacoccaceae
GenusDermacoccus
SpeciesDermacoccus nishinomiyaensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dermacoccus nishinomiyaensis str. M25

Accession NumberNZ_CP008889.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2704 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fmn-binding negative transcriptional regulatorHX89_RS16005Not Available+19 - 48317328.5
wgr domain-containing proteinHX89_RS00010Not Available+553 - 8259544.11
hypothetical proteinHX89_RS00015Not Available+773 - 177435032.9
hypothetical proteinHX89_RS16090Not Available-1891 - 231014950.7
duf4132 domain-containing proteinHX89_RS14930Not Available+2340 - 352143150.6
hypothetical proteinHX89_RS00030Not Available-3635 - 418921335.6
deoxyribodipyrimidine photo-lyaseHX89_RS00035Not Available-4211 - 561152164.7
duf3072 domain-containing proteinHX89_RS00040Not Available-5817 - 614311300.7
hypothetical proteinHX89_RS00045Not Available-6354 - 65426203.74
gtpase domain-containing proteinHX89_RS00050Not Available+6730 - 750627134.3

Displaying genes 1 – 10 of 2847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

323 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003903D-glycero-D-manno-heptose 1-phosphateC7H13O10PChemical structure of D-glycero-D-manno-heptose 1-phosphateNot available
Average288.1459Da
Monoisotopic288.024633148Da
BASm0003926sirohemeC42H36FeN4O16Not available52553-42-1
Average908.611Da
Monoisotopic908.151956Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm00040072-methoxy-6-all-trans-octaprenyl-1,4-benzoquinolC47H72O3Chemical structure of 2-methoxy-6-all-trans-octaprenyl-1,4-benzoquinolNot available
Average685.0728Da
Monoisotopic684.5481462Da
BASm0004098L-alanyl-L-glutamateC8H13N2O5Chemical structure of L-alanyl-L-glutamateNot available
Average217.1992Da
Monoisotopic217.082446536Da
BASm0004131(2E)-hexadecenoyl-CoAC37H60N7O17P3SChemical structure of (2E)-hexadecenoyl-CoA4460-95-1
Average999.895Da
Monoisotopic999.297923755Da
BASm0004157menaquinol-8C51H74O2Chemical structure of menaquinol-8Not available
Average719.1321Da
Monoisotopic718.568881612Da
BASm00041782-demethylmenaquinol-8C50H72O2Chemical structure of 2-demethylmenaquinol-8Not available
Average705.1055Da
Monoisotopic704.553231548Da
BASm0004183butane-1-sulfonateC4H9O3SChemical structure of butane-1-sulfonateNot available
Average137.177Da
Monoisotopic137.027239844Da
BASm0004254(2E,4E)-decadienoyl-CoAC31H46N7O17P3SChemical structure of (2E,4E)-decadienoyl-CoANot available
Average913.72Da
Monoisotopic913.190569537Da

Displaying 41–50 of 323 metabolites