Dermacoccus nishinomiyaensis str. M25

Gram-positiveCocciAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermacoccaceae

Genus

Dermacoccus

Description

Dermacoccus nishinomiyaensis strain M25 is a Gram-positive, aerobic coccus that exhibits notable resilience in its environmental niche. This microorganism is characterized by its spherical shape, which is typical of many members of the genus Dermacoccus. As an aerobic organism, D. nishinomiyaensis strain M25 necessitates oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, which is a common feature among many cocci and contributes to its structural integrity. While the specific habitat and ecological roles of D. nishinomiyaensis strain M25 have not been detailed, its classification suggests a potential adaptability to varied environments, possibly including soil or surfaces where organic matter is present. The unique combination of traits exhibited by D. nishinomiyaensis strain M25 may indicate a role in the degradation of organic materials or in interactions with other microbial communities, though further research would be necessary to elucidate its precise ecological function. This strain could potentially serve as a model for studying aerobic, Gram-positive cocci in microbiological research, contributing to a better understanding of microbial diversity and functionality in various ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermacoccaceae
GenusDermacoccus
SpeciesDermacoccus nishinomiyaensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dermacoccus nishinomiyaensis str. M25

Accession NumberNZ_CP008889.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2704 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fmn-binding negative transcriptional regulatorHX89_RS16005Not Available+19 - 48317328.5
wgr domain-containing proteinHX89_RS00010Not Available+553 - 8259544.11
hypothetical proteinHX89_RS00015Not Available+773 - 177435032.9
hypothetical proteinHX89_RS16090Not Available-1891 - 231014950.7
duf4132 domain-containing proteinHX89_RS14930Not Available+2340 - 352143150.6
hypothetical proteinHX89_RS00030Not Available-3635 - 418921335.6
deoxyribodipyrimidine photo-lyaseHX89_RS00035Not Available-4211 - 561152164.7
duf3072 domain-containing proteinHX89_RS00040Not Available-5817 - 614311300.7
hypothetical proteinHX89_RS00045Not Available-6354 - 65426203.74
gtpase domain-containing proteinHX89_RS00050Not Available+6730 - 750627134.3

Displaying genes 1 – 10 of 2847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

323 records
Metabolite IDMetabolite nameStructureCAS number
BASm0034635Cobalt-precorrin 8C45H59CoN4O14Chemical structure of Cobalt-precorrin 8NULL
Average938.914Da
Monoisotopic938.335972Da
BASm0034636Precorrin 6BC44H56N4O16Chemical structure of Precorrin 6BNULL
Average896.944Da
Monoisotopic896.369131739Da
BASm0034638Adenosine-GDP-cobinamideC68H97CoN21O21P2Chemical structure of Adenosine-GDP-cobinamideNULL
Average1665.5066Da
Monoisotopic1664.597512489Da
BASm00346435-Carboxymethyl-2-hydroxymuconate semialdehydeC8H8O6Chemical structure of 5-Carboxymethyl-2-hydroxymuconate semialdehydeNULL
Average200.146Da
Monoisotopic200.032087978Da
BASm0034649Propinol adenylateC13H18N5O8PChemical structure of Propinol adenylateNULL
Average403.2845Da
Monoisotopic403.089299089Da
BASm0034652Starch, Structure 2 (1,6-{2[1,4-Glc], [1,4-Glc]})C18H32O16Not availableNULL
Average504.438Da
Monoisotopic504.16903495Da
BASm0034653Starch, Structure 1 (1,6-{7[1,4-Glc], 4[1,4-Glc]})C66H112O56Chemical structure of Starch, Structure 1 (1,6-{7[1,4-Glc], 4[1,4-Glc]})NULL
Average1801.566Da
Monoisotopic1800.591622326Da
BASm003465710-Formyltetrahydrofolate-[Glu](5)C40H45N11O19Not availableNULL
Average983.861Da
Monoisotopic983.292609752Da
BASm0034661Precorrin 3BC43H50N4O17Chemical structure of Precorrin 3BNULL
Average894.884Da
Monoisotopic894.317096166Da
BASm0034662Cobalt-precorrin 2C42H46CoN4O16Chemical structure of Cobalt-precorrin 2NULL
Average921.775Da
Monoisotopic921.224075Da

Displaying 301–310 of 323 metabolites