Dermacoccus nishinomiyaensis str. M25

Gram-positiveCocciAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermacoccaceae

Genus

Dermacoccus

Description

Dermacoccus nishinomiyaensis strain M25 is a Gram-positive, aerobic coccus that exhibits notable resilience in its environmental niche. This microorganism is characterized by its spherical shape, which is typical of many members of the genus Dermacoccus. As an aerobic organism, D. nishinomiyaensis strain M25 necessitates oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, which is a common feature among many cocci and contributes to its structural integrity. While the specific habitat and ecological roles of D. nishinomiyaensis strain M25 have not been detailed, its classification suggests a potential adaptability to varied environments, possibly including soil or surfaces where organic matter is present. The unique combination of traits exhibited by D. nishinomiyaensis strain M25 may indicate a role in the degradation of organic materials or in interactions with other microbial communities, though further research would be necessary to elucidate its precise ecological function. This strain could potentially serve as a model for studying aerobic, Gram-positive cocci in microbiological research, contributing to a better understanding of microbial diversity and functionality in various ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermacoccaceae
GenusDermacoccus
SpeciesDermacoccus nishinomiyaensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dermacoccus nishinomiyaensis str. M25

Accession NumberNZ_CP008889.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2704 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fmn-binding negative transcriptional regulatorHX89_RS16005Not Available+19 - 48317328.5
wgr domain-containing proteinHX89_RS00010Not Available+553 - 8259544.11
hypothetical proteinHX89_RS00015Not Available+773 - 177435032.9
hypothetical proteinHX89_RS16090Not Available-1891 - 231014950.7
duf4132 domain-containing proteinHX89_RS14930Not Available+2340 - 352143150.6
hypothetical proteinHX89_RS00030Not Available-3635 - 418921335.6
deoxyribodipyrimidine photo-lyaseHX89_RS00035Not Available-4211 - 561152164.7
duf3072 domain-containing proteinHX89_RS00040Not Available-5817 - 614311300.7
hypothetical proteinHX89_RS00045Not Available-6354 - 65426203.74
gtpase domain-containing proteinHX89_RS00050Not Available+6730 - 750627134.3

Displaying genes 1 – 10 of 2847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

323 records
Metabolite IDMetabolite nameStructureCAS number
BASm0034613Palmitoleyl-CoAC37H64N7O17P3SChemical structure of Palmitoleyl-CoA18198-76-0
Average1003.93Da
Monoisotopic1003.329225797Da
BASm00346153-Carboxy-1-hydroxypropylthiamine diphosphateC16H25N4O10P2SChemical structure of 3-Carboxy-1-hydroxypropylthiamine diphosphateNULL
Average527.403Da
Monoisotopic527.076661754Da
BASm0034617S-(2-Methylpropionyl)-dihydrolipoamide-EC12H23NO2S2Chemical structure of S-(2-Methylpropionyl)-dihydrolipoamide-ENULL
Average277.447Da
Monoisotopic277.117020365Da
BASm0034618S-(2-Methylbutanoyl)-dihydrolipoamideC13H25NO2S2Chemical structure of S-(2-Methylbutanoyl)-dihydrolipoamideNULL
Average291.473Da
Monoisotopic291.132670429Da
BASm00346193a,7a-Dihydroxy-5b-cholestan-26-alC27H46O3Chemical structure of 3a,7a-Dihydroxy-5b-cholestan-26-alNULL
Average418.6523Da
Monoisotopic418.344695338Da
BASm0034621Se-AdenosylselenohomocysteineC14H20N6O5SeChemical structure of Se-AdenosylselenohomocysteineNULL
Average431.31Da
Monoisotopic432.066039608Da
BASm00346253 alpha,7 alpha,26-Trihydroxy-5beta-cholestaneC27H48O3Chemical structure of 3 alpha,7 alpha,26-Trihydroxy-5beta-cholestane15313-69-6
Average420.6682Da
Monoisotopic420.360345402Da
BASm0034632Adenosyl cobyrinate diamideC55H73CoN11O15Chemical structure of Adenosyl cobyrinate diamideNULL
Average1187.166Da
Monoisotopic1186.461960915Da
BASm0034633CobyrinateC45H59CoN4O14Chemical structure of CobyrinateNULL
Average938.913Da
Monoisotopic938.334874Da
BASm0034634Cobalt-dihydro-precorrin 6C44H55CoN4O16Chemical structure of Cobalt-dihydro-precorrin 6NULL
Average954.869Da
Monoisotopic954.293952Da

Displaying 291–300 of 323 metabolites