Dermacoccus nishinomiyaensis str. M25

Gram-positiveCocciAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermacoccaceae

Genus

Dermacoccus

Description

Dermacoccus nishinomiyaensis strain M25 is a Gram-positive, aerobic coccus that exhibits notable resilience in its environmental niche. This microorganism is characterized by its spherical shape, which is typical of many members of the genus Dermacoccus. As an aerobic organism, D. nishinomiyaensis strain M25 necessitates oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, which is a common feature among many cocci and contributes to its structural integrity. While the specific habitat and ecological roles of D. nishinomiyaensis strain M25 have not been detailed, its classification suggests a potential adaptability to varied environments, possibly including soil or surfaces where organic matter is present. The unique combination of traits exhibited by D. nishinomiyaensis strain M25 may indicate a role in the degradation of organic materials or in interactions with other microbial communities, though further research would be necessary to elucidate its precise ecological function. This strain could potentially serve as a model for studying aerobic, Gram-positive cocci in microbiological research, contributing to a better understanding of microbial diversity and functionality in various ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermacoccaceae
GenusDermacoccus
SpeciesDermacoccus nishinomiyaensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dermacoccus nishinomiyaensis str. M25

Accession NumberNZ_CP008889.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2704 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fmn-binding negative transcriptional regulatorHX89_RS16005Not Available+19 - 48317328.5
wgr domain-containing proteinHX89_RS00010Not Available+553 - 8259544.11
hypothetical proteinHX89_RS00015Not Available+773 - 177435032.9
hypothetical proteinHX89_RS16090Not Available-1891 - 231014950.7
duf4132 domain-containing proteinHX89_RS14930Not Available+2340 - 352143150.6
hypothetical proteinHX89_RS00030Not Available-3635 - 418921335.6
deoxyribodipyrimidine photo-lyaseHX89_RS00035Not Available-4211 - 561152164.7
duf3072 domain-containing proteinHX89_RS00040Not Available-5817 - 614311300.7
hypothetical proteinHX89_RS00045Not Available-6354 - 65426203.74
gtpase domain-containing proteinHX89_RS00050Not Available+6730 - 750627134.3

Displaying genes 1 – 10 of 2847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

323 records
Metabolite IDMetabolite nameStructureCAS number
BASm0019929CyanideCHNChemical structure of Cyanide57-12-5
Average27.0253Da
Monoisotopic27.010899037Da
BASm0019931N-Acetylglutamic acidC7H11NO5Chemical structure of N-Acetylglutamic acid1188-37-0
Average189.1659Da
Monoisotopic189.063722467Da
BASm00199488-Amino-7-oxononanoateC9H17NO3Chemical structure of 8-Amino-7-oxononanoate4707-58-8
Average187.2362Da
Monoisotopic187.120843415Da
BASm0019965DihydrobiopterinC9H13N5O3Chemical structure of Dihydrobiopterin6779-87-9
Average239.2312Da
Monoisotopic239.101839307Da
BASm0019985Nicotinic acid mononucleotideC11H16NO9PChemical structure of Nicotinic acid mononucleotide321-02-8
Average337.2198Da
Monoisotopic337.056267627Da
BASm00200002-trans,6-trans,10-trans-Geranylgeranyl diphosphateC20H36O7P2Chemical structure of 2-trans,6-trans,10-trans-Geranylgeranyl diphosphate6699-20-3
Average450.4432Da
Monoisotopic450.19362653Da
BASm0020004UDP-D-glucoseC15H24N2O17P2Chemical structure of UDP-D-glucose133-89-1
Average566.3018Da
Monoisotopic566.055020376Da
BASm0020017trans-tetradec-2-enoyl-CoAC35H60N7O17P3SChemical structure of trans-tetradec-2-enoyl-CoANULL
Average975.874Da
Monoisotopic975.297923755Da
BASm002002210-Formyltetrahydrofolic acidC20H23N7O7Chemical structure of 10-Formyltetrahydrofolic acid2800-34-2
Average473.4393Da
Monoisotopic473.165896125Da
BASm0020024pimeloyl-CoAC28H46N7O19P3SChemical structure of pimeloyl-CoA18907-20-5
Average909.687Da
Monoisotopic909.178202551Da

Displaying 271–280 of 323 metabolites