Pediococcus pentosaceus

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus pentosaceus is a gram-positive, spherical bacterium (cocci) that typically forms pairs or tetrads, thriving at mesophilic temperatures (optimal around 30-37°C). This organism is a chemoheterotroph, obtaining its energy and carbon from organic compounds, and is classified as a facultative anaerobe, able to grow in both aerobic and anaerobic conditions. As a gram-positive bacterium, Pediococcus pentosaceus retains the crystal violet stain used in the Gram staining procedure, resulting in a characteristic purple hue. Its coccoid shape and tendency to form clusters contribute to its distinctive morphology, which can be observed under the microscope. The mesophilic nature of this microbe makes it particularly suited for fermentation processes that occur at moderate temperatures, such as those in the food industry. As a chemoheterotroph, Pediococcus pentosaceus primarily relies on various carbohydrates for energy, demonstrating its versatility in utilizing different organic substrates. Its facultative anaerobic capability allows it to grow in the presence or absence of oxygen, making it a highly adaptable organism in different environments, especially in fermented food systems. This bacterium is predominantly found in plant materials, fermented foods, and the gastrointestinal tracts of animals, indicating its role in both natural ecosystems and human food production. It is commonly used as a starter culture in the fermentation of vegetables, meats, and dairy products, contributing to the production of foods like pickles and sausages. Beyond its culinary applications, Pediococcus pentosaceus is noted for its ability to produce bacteriocins, which are antimicrobial peptides that can inhibit the growth of pathogenic bacteria, thus enhancing food safety and preservation. This property not only adds value to the fermentation process but also supports the concept of using natural preservatives in food products.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus pentosaceus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Pediococcus pentosaceus
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementTetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pediococcus pentosaceus

Accession NumberJQBF00000000.1

Gene Summary

Adenine Count

551519 bp

Thymine Count

540013 bp

Guanine Count

334565 bp

Cytosine Count

313408 bp

Genome Length

1739506 bp

Protein-coding Genes

1648 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hemolysin iii-like proteinIV86_GL000001P54176-74 - 71223496.8
bs ykrk family proteinIV86_GL000002Not Available+840 - 129818130.2
c-di-gmp-specific phosphodiesteraseIV86_GL000003Not Available-1334 - 201425986.9
nad(fad)-dependent dehydrogenaseIV86_GL000004Not Available+2139 - 350049930.5
hypothetical proteinIV86_GL000005Not Available-3585 - 422324802.7
membrane transporterIV86_GL000006Q8XDQ5-4243 - 456311568.8
hypothetical proteinIV86_GL000007Not Available-4825 - 529217127.6
hypothetical proteinIV86_GL000008Not Available-5316 - 665347901.6
permease, cadmium resistance proteinIV86_GL000009Not Available-6781 - 738621837.9
arsr family transcriptional regulatorIV86_GL000010Not Available+7452 - 778712947.9

Displaying genes 1 – 10 of 3714 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

91 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003700(R)-2-(carboxymethyl)-5-oxo-2,5-dihydro-2-furoateC7H4O6Chemical structure of (R)-2-(carboxymethyl)-5-oxo-2,5-dihydro-2-furoateNot available
Average184.104Da
Monoisotopic184.001885009Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0003841N-[(R)-4-phosphopantothenoyl]-L-cysteineC12H20N2O9PSChemical structure of N-[(R)-4-phosphopantothenoyl]-L-cysteineNot available
Average399.33Da
Monoisotopic399.064359144Da
BASm0003866keto-D-fructuronateC6H9O7Chemical structure of keto-D-fructuronateNot available
Average193.132Da
Monoisotopic193.03537621Da
BASm0003915Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphateC86H140N7O21P2Chemical structure of Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1670.043Da
Monoisotopic1668.959399292Da
BASm0003969(2R)-2-O-(6-phospho-alpha-D-mannosyl)-glycerateC9H14O12PChemical structure of (2R)-2-O-(6-phospho-alpha-D-mannosyl)-glycerateNot available
Average345.174Da
Monoisotopic345.023933629Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0003992adenosylcob(III)alamin 5'-phosphateC72H99CoN18O20P2Chemical structure of adenosylcob(III)alamin 5'-phosphateNot available
Average1657.572Da
Monoisotopic1656.610118Da
BASm0004102dATPC10H12N5O12P3Chemical structure of dATP1927-31-7
Average487.152Da
Monoisotopic486.97172616Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da

Displaying 51–60 of 91 metabolites