Pediococcus pentosaceus

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus pentosaceus is a gram-positive, spherical bacterium (cocci) that typically forms pairs or tetrads, thriving at mesophilic temperatures (optimal around 30-37°C). This organism is a chemoheterotroph, obtaining its energy and carbon from organic compounds, and is classified as a facultative anaerobe, able to grow in both aerobic and anaerobic conditions. As a gram-positive bacterium, Pediococcus pentosaceus retains the crystal violet stain used in the Gram staining procedure, resulting in a characteristic purple hue. Its coccoid shape and tendency to form clusters contribute to its distinctive morphology, which can be observed under the microscope. The mesophilic nature of this microbe makes it particularly suited for fermentation processes that occur at moderate temperatures, such as those in the food industry. As a chemoheterotroph, Pediococcus pentosaceus primarily relies on various carbohydrates for energy, demonstrating its versatility in utilizing different organic substrates. Its facultative anaerobic capability allows it to grow in the presence or absence of oxygen, making it a highly adaptable organism in different environments, especially in fermented food systems. This bacterium is predominantly found in plant materials, fermented foods, and the gastrointestinal tracts of animals, indicating its role in both natural ecosystems and human food production. It is commonly used as a starter culture in the fermentation of vegetables, meats, and dairy products, contributing to the production of foods like pickles and sausages. Beyond its culinary applications, Pediococcus pentosaceus is noted for its ability to produce bacteriocins, which are antimicrobial peptides that can inhibit the growth of pathogenic bacteria, thus enhancing food safety and preservation. This property not only adds value to the fermentation process but also supports the concept of using natural preservatives in food products.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus pentosaceus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Pediococcus pentosaceus
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementTetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pediococcus pentosaceus

Accession NumberJQBF00000000.1

Gene Summary

Adenine Count

551519 bp

Thymine Count

540013 bp

Guanine Count

334565 bp

Cytosine Count

313408 bp

Genome Length

1739506 bp

Protein-coding Genes

1648 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hemolysin iii-like proteinIV86_GL000001P54176-74 - 71223496.8
bs ykrk family proteinIV86_GL000002Not Available+840 - 129818130.2
c-di-gmp-specific phosphodiesteraseIV86_GL000003Not Available-1334 - 201425986.9
nad(fad)-dependent dehydrogenaseIV86_GL000004Not Available+2139 - 350049930.5
hypothetical proteinIV86_GL000005Not Available-3585 - 422324802.7
membrane transporterIV86_GL000006Q8XDQ5-4243 - 456311568.8
hypothetical proteinIV86_GL000007Not Available-4825 - 529217127.6
hypothetical proteinIV86_GL000008Not Available-5316 - 665347901.6
permease, cadmium resistance proteinIV86_GL000009Not Available-6781 - 738621837.9
arsr family transcriptional regulatorIV86_GL000010Not Available+7452 - 778712947.9

Displaying genes 1 – 10 of 3714 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

91 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001864Cr(6+)CrChemical structure of Cr(6+)Not available
Average51.9961Da
Monoisotopic51.9405119Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001988(R)-mevalonateC6H11O4Chemical structure of (R)-mevalonateNot available
Average147.1491Da
Monoisotopic147.0657338Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm0002665prostaglandin F2alphaC20H33O5Chemical structure of prostaglandin F2alpha0551-11-1
Average353.48Da
Monoisotopic353.2333477Da
BASm0002666prostaglandin H2C20H31O5Chemical structure of prostaglandin H242935-17-1
Average351.464Da
Monoisotopic351.2176977Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 21–30 of 91 metabolites