Flavobacterium columnare

Gram-negativeRodMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium columnare is a mesophilic, chemoheterotrophic, Gram-negative bacterium that thrives in a temperature range of 15-30°C (59-86°F). As a chemoheterotroph, it produces energy by breaking down organic compounds, relying on external sources of carbon and energy. This microbe is capable of fermentative metabolism, utilizing energy from the degradation of complex organic molecules. F. columnare is a rod-shaped bacterium, typically measuring 0.5-1.5 μm in length and 0.2-0.4 μm in width. The bacterium's cell wall is negative when stained with Gram stain, meaning it lacks a thick peptidoglycan layer. This characteristic, along with its rod shape, is typical of many Gram-negative bacteria. F. columnare has been found to inhabit a wide range of environments, including aquatic ecosystems, soil, and the gastrointestinal tracts of various animals, including fish and humans. F. columnare is an obligate aerobe, requiring the presence of oxygen to survive. In its natural habitat, it likely thrives in well-oxygenated environments, exploiting the abundance of organic matter and oxygen. Notably, this microbe has been associated with various diseases, including skin and soft tissue infections, as well as ocular infections in humans. Despite its potential pathogenicity, F. columnare has also been found to play a vital role in decomposing organic matter, breaking down complex compounds into simpler substances. Its ability to degrade organic matter makes it an important component of aquatic ecosystems, contributing to the cycling of nutrients and the maintenance of ecosystem balance. Studies have also shown that F. columnare possesses a unique antibiotic resistance mechanism, which enables it to survive in environments where other microorganisms would be unable to thrive. This remarkable adaptability underscores the importance of continued research into the biology and ecology of this fascinating microbe, allowing us to better understand its role in shaping our natural and medical environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium columnare
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium columnare
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
Pathogenicityfish

Genome Summary

Flavobacterium columnare

Accession NumberOLKH00000000.1

Gene Summary

Adenine Count

1127125 bp

Thymine Count

1130068 bp

Guanine Count

502099 bp

Cytosine Count

496213 bp

Genome Length

3255895 bp

Protein-coding Genes

2709 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sulfite exporter taue/safeFLACOL_01106Not Available+1277050 - 127741813070.9
ahpc/tsa family proteinFLACOL_01107Not Available-1277419 - 127812027168.8
hypothetical proteinFLACOL_01108Not Available-1278269 - 127878419816.7
50s ribosomal protein l34FLACOL_01109Not Available+1278994 - 12791556315.85
carbamoyl-phosphate synthase large chainFLACOL_01110Not Available+1279308 - 1282163105963.0
h(+)/cl(-) exchange transporter clcaFLACOL_01111Not Available+1282379 - 128419666768.9
fumarate and nitrate reduction regulatory proteinFLACOL_01112Not Available-1284207 - 128489326391.0
hypothetical proteinFLACOL_01113Not Available+1284984 - 128542416675.3
na(+)/h(+) antiporter nhaaFLACOL_01114Not Available-1286563 - 128770241615.4
inward rectifier potassium channel kirbac3.1FLACOL_01115Not Available+1287751 - 128870736131.7

Displaying genes 1111 – 1120 of 2786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014071ChitinC24H41N3O16Chemical structure of Chitin1398-61-4
Average627.5928Da
Monoisotopic627.248682279Da

Displaying 1–2 of 2 metabolites