Cellulophaga lytica str. DAU203

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Cellulophaga

Description

Cellulophaga lytica strain DAU203 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and exhibits optimal growth at a temperature of 25.0°C. This strain is characterized as a heterotrophic chemotroph, indicating its reliance on organic compounds as an energy source, which it metabolizes through chemical means. Cellulophaga lytica is notable for its role in the degradation of complex organic materials, particularly in environments where cellulose is abundant. This trait suggests its potential utility in biotechnological applications focused on waste management and biofuel production, where efficient breakdown of plant materials is crucial. Moreover, the bacterium's aerobic metabolism may influence its ecological interactions, particularly in oxygen-rich environments where it can outcompete other microbes for organic substrates. The specific growth temperature of 25.0°C aligns with its potential isolation from temperate environments, where it may play an essential role in nutrient cycling. Understanding the metabolic pathways and ecological niches of Cellulophaga lytica strain DAU203 could provide valuable insights into microbial community dynamics and the decomposition processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCellulophaga
SpeciesCellulophaga lytica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceheterotroph; chemotroph
PathogenicityNot Available

Genome Summary

Cellulophaga lytica str. DAU203

Accession NumberNZ_CP015172.1

Gene Summary

Adenine Count

1347310 bp

Thymine Count

1339911 bp

Guanine Count

639190 bp

Cytosine Count

626546 bp

Genome Length

3952957 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ydei/ompd-associated family proteinA5M85_RS13505Not Available-3077231 - 307780622226.4
hypothetical proteinA5M85_RS13510Not Available+3077873 - 307845122103.6
m16 family metallopeptidaseA5M85_RS13515Not Available+3078485 - 3081337105633.0
m1 family metallopeptidaseA5M85_RS13520Not Available-3081426 - 308304862251.7
fkbp-type peptidyl-prolyl cis-trans isomeraseA5M85_RS13525Not Available-3083158 - 308362216856.7
m28 family peptidaseA5M85_RS13530Not Available-3083692 - 308502949612.2
mfs transporterA5M85_RS13535Not Available-3085035 - 308621942163.7
bifunctional alpha,alpha-trehalose-phosphate synthase (udp-forming)/trehalose-phosphataseA5M85_RS13540Not Available-3086279 - 308848685317.5
glycoside hydrolase family 15 proteinA5M85_RS13545Not Available+3088589 - 309039169481.6
pyridoxal phosphate-dependent decarboxylase family proteinA5M85_RS13550Not Available-3090450 - 309186552881.1

Displaying genes 2711 – 2720 of 3486 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites