Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Herbaspirillum seropedicae str. AU13965
Accession NumberNZ_CP034395.1
Gene Summary
Adenine Count
988071 bp
Thymine Count
984583 bp
Guanine Count
1688182 bp
Cytosine Count
1689162 bp
Genome Length
5349998 bp
Protein-coding Genes
4674 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxybenzoate 3-monooxygenase | EJD96_RS19960 | Not Available | - | 4440513 - 4441679 | 43338.5 |
| helix-turn-helix domain-containing protein | EJD96_RS19965 | Not Available | + | 4441901 - 4442812 | 34457.6 |
| iclr family transcriptional regulator c-terminal domain-containing protein | EJD96_RS19970 | Not Available | - | 4442930 - 4443730 | 29138.7 |
| protocatechuate 3,4-dioxygenase subunit beta | EJD96_RS19975 | Not Available | + | 4444000 - 4444692 | 26206.3 |
| protocatechuate 3,4-dioxygenase | EJD96_RS19980 | Not Available | + | 4444712 - 4445224 | 18533.7 |
| 3-carboxy-cis,cis-muconate cycloisomerase | EJD96_RS19985 | Not Available | + | 4445325 - 4446692 | 48472.0 |
| 3-oxoadipate enol-lactonase | EJD96_RS19990 | Not Available | + | 4446752 - 4448014 | 45078.9 |
| hypothetical protein | EJD96_RS19995 | Not Available | - | 4448393 - 4449013 | 23970.0 |
| hypothetical protein | EJD96_RS20000 | Not Available | + | 4449214 - 4450089 | 33183.5 |
| abc transporter substrate-binding protein | EJD96_RS20005 | Not Available | - | 4450713 - 4451897 | 41798.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.