Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Herbaspirillum seropedicae str. AU13965
Accession NumberNZ_CP034395.1
Gene Summary
Adenine Count
988071 bp
Thymine Count
984583 bp
Guanine Count
1688182 bp
Cytosine Count
1689162 bp
Genome Length
5349998 bp
Protein-coding Genes
4674 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| histidine--trna ligase | EJD96_RS14460 | Not Available | - | 3210742 - 3212097 | 50478.9 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | EJD96_RS14465 | Not Available | - | 3212236 - 3213498 | 44937.2 |
| helix-turn-helix domain-containing protein | EJD96_RS14470 | Not Available | - | 3213514 - 3214602 | 36711.3 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | EJD96_RS14475 | Not Available | - | 3214903 - 3216075 | 43459.6 |
| nucleoside-diphosphate kinase | EJD96_RS14480 | Not Available | - | 3216172 - 3216597 | 15511.6 |
| bax inhibitor-1/ycca family protein | EJD96_RS14485 | Not Available | + | 3216873 - 3217562 | 24643.6 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | EJD96_RS14490 | Not Available | - | 3217642 - 3219000 | 50322.3 |
| rna polymerase sigma factor rpos | EJD96_RS14495 | Not Available | - | 3219168 - 3220181 | 38130.1 |
| peptidoglycan dd-metalloendopeptidase family protein | EJD96_RS14500 | Not Available | - | 3220185 - 3221183 | 33850.1 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | EJD96_RS14505 | Not Available | - | 3221411 - 3222376 | 34248.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.