Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Herbaspirillum seropedicae str. AU13965
Accession NumberNZ_CP034395.1
Gene Summary
Adenine Count
988071 bp
Thymine Count
984583 bp
Guanine Count
1688182 bp
Cytosine Count
1689162 bp
Genome Length
5349998 bp
Protein-coding Genes
4674 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| murr/rpir family transcriptional regulator | EJD96_RS12005 | Not Available | - | 2650742 - 2651587 | 31542.8 |
| sugar abc transporter substrate-binding protein | EJD96_RS12010 | Not Available | + | 2651941 - 2652936 | 35670.4 |
| abc transporter permease | EJD96_RS12015 | Not Available | + | 2653053 - 2654192 | 40381.2 |
| atp-binding cassette domain-containing protein | EJD96_RS12020 | Not Available | + | 2654189 - 2654989 | 28964.7 |
| bifunctional 5-dehydro-2-deoxygluconokinase/5-dehydro-2- deoxyphosphogluconate aldolase | EJD96_RS12025 | Not Available | + | 2655000 - 2656982 | 73014.4 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | EJD96_RS12030 | Not Available | + | 2656979 - 2658868 | 67507.0 |
| myo-inosose-2 dehydratase | EJD96_RS12035 | Not Available | + | 2658911 - 2659831 | 33668.2 |
| 5-deoxy-glucuronate isomerase | EJD96_RS12040 | Not Available | + | 2659828 - 2660622 | 29356.4 |
| hypothetical protein | EJD96_RS12045 | Not Available | - | 2660619 - 2660945 | 12002.3 |
| pepsy-associated tm helix domain-containing protein | EJD96_RS12050 | Not Available | + | 2661226 - 2662533 | 48888.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.